Whole-genome sequence data and analysis of Saccharibacillus sp. ATSA2 isolated from Kimchi cabbage seeds

Lingmin Jiang; Chan Ju Lim; Jae Cheol Jeong; Cha Young Kim; Dae-Hyuk Kim; Suk Weon Kim; Jiyoung Lee

doi:10.1016/j.dib.2019.104465

Whole-genome sequence data and analysis of Saccharibacillus sp. ATSA2 isolated from Kimchi cabbage seeds

Data Brief. 2019 Aug 31:26:104465. doi: 10.1016/j.dib.2019.104465. eCollection 2019 Oct.

Authors

Lingmin Jiang^{1

2}, Chan Ju Lim³, Jae Cheol Jeong¹, Cha Young Kim¹, Dae-Hyuk Kim², Suk Weon Kim¹, Jiyoung Lee¹

Affiliations

¹ Korean Collection for Type Cultures (KCTC), Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Jeongeup, 56212, Republic of Korea.
² Department of Bioactive Materials, Chonbuk National University, Jeonju, 54896, Republic of Korea.
³ Asia Seed Co., Research Institute of Biotechnology Breeding, Icheon, 17414, Republic of Korea.

Abstract

Saccharibacillus sp. ATSA2 was isolated from Kimchi cabbage seeds grown in Gyeongbuk province in the Republic of Korea. Whole-genome sequencing of Saccharibacillus sp. ATSA2 was performed using the PacBio RSII and Illumina HiSeq platforms, and it features a 5,619,468 bp circular chromosome with 58.4% G + C content. The genome includes 4543 protein-coding genes, 104 RNA genes (70 transfer RNA genes, 30 ribosomal RNA genes, and 4 non-coding RNA), and 73 pseudogenes. Multiple gene clusters associated with stress responses, nitrogen and phosphorus metabolism, and plant hormone biosynthesis were annotated in the genome. The genome information will provide fundamental knowledge of this organism as well as insight for understanding microbial activity in the agricultural application. The whole-genome sequence of Saccharibacillus sp. ATSA2 is available at GenBank/EMBL/DDBJ under accession number CP041217.

Keywords: Complete genome sequence; HGAP, hierarchical genome assembly process; Kimchi cabbage seeds; PHO, phosphate; RAST, rapid annotations subsystems technology; Rapid annotation subsystem technology (RAST); SMRT, single-molecule real-time; Saccharibacillus sp. ATSA2; ncRNA, non-coding RNA; rRNA, ribosomal RNA; tRNA, transfer RNA.