Redundant and additive functions of the four Lef/Tcf transcription factors in lung epithelial progenitors

Proc Natl Acad Sci U S A. 2020 Jun 2;117(22):12182-12191. doi: 10.1073/pnas.2002082117. Epub 2020 May 15.

Abstract

In multicellular organisms, paralogs from gene duplication survive purifying selection by evolving tissue-specific expression and function. Whether this genetic redundancy is also selected for within a single cell type is unclear for multimember paralogs, as exemplified by the four obligatory Lef/Tcf transcription factors of canonical Wnt signaling, mainly due to the complex genetics involved. Using the developing mouse lung as a model system, we generate two quadruple conditional knockouts, four triple mutants, and various combinations of double mutants, showing that the four Lef/Tcf genes function redundantly in the presence of at least two Lef/Tcf paralogs, but additively upon losing additional paralogs to specify and maintain lung epithelial progenitors. Prelung-specification, pan-epithelial double knockouts have no lung phenotype; triple knockouts have varying phenotypes, including defective branching and tracheoesophageal fistulas; and the quadruple knockout barely forms a lung, resembling the Ctnnb1 mutant. Postlung-specification deletion of all four Lef/Tcf genes leads to branching defects, down-regulation of progenitor genes, premature alveolar differentiation, and derepression of gastrointestinal genes, again phenocopying the corresponding Ctnnb1 mutant. Our study supports a monotonic, positive signaling relationship between CTNNB1 and Lef/Tcf in lung epithelial progenitors as opposed to reported repressor functions of Lef/Tcf, and represents a thorough in vivo analysis of cell-type-specific genetic redundancy among the four Lef/Tcf paralogs.

Keywords: Lef/Tcf transcription factors; Wnt signaling; epithelial progenitors; gene duplication; lung development.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Cell Differentiation
  • Embryo, Mammalian / cytology
  • Embryo, Mammalian / metabolism*
  • Embryonic Stem Cells / cytology
  • Embryonic Stem Cells / metabolism*
  • Female
  • Gene Expression Regulation, Developmental*
  • Hepatocyte Nuclear Factor 1-alpha / physiology
  • Lung / cytology
  • Lung / metabolism*
  • Lymphoid Enhancer-Binding Factor 1 / physiology*
  • Mice
  • Mice, Knockout
  • Single-Cell Analysis
  • Stem Cells / cytology
  • Stem Cells / metabolism*
  • Transcription Factor 7-Like 1 Protein / physiology
  • Transcription Factor 7-Like 2 Protein / physiology
  • Wnt Proteins / genetics
  • Wnt Proteins / metabolism
  • beta Catenin / genetics
  • beta Catenin / metabolism*

Substances

  • CTNNB1 protein, mouse
  • Hepatocyte Nuclear Factor 1-alpha
  • Hnf1a protein, mouse
  • Lef1 protein, mouse
  • Lymphoid Enhancer-Binding Factor 1
  • Tcf7l1 protein, mouse
  • Tcf7l2 protein, mouse
  • Transcription Factor 7-Like 1 Protein
  • Transcription Factor 7-Like 2 Protein
  • Wnt Proteins
  • beta Catenin