Recovery and Genetic Characterization of a West Nile Virus Isolate from China

Virol Sin. 2021 Feb;36(1):113-121. doi: 10.1007/s12250-020-00246-x. Epub 2020 Jul 6.

Abstract

West Nile virus (WNV) is an important neurotropic flavivirus that is widely distributed globally. WNV strain XJ11129 was first isolated in Xinjiang, China, and its genetic and biological characteristics remain largely unknown. In this study, phylogenetic and sequence analyses revealed that XJ11129 belongs to lineage 1a and shares high genetic identity with the highly pathogenic strain NY99. Then, the full-length genomic cDNA of XJ11129 was amplified and assembled using a modified Gibson assembly (GA) method. The virus (named rXJ11129) was successfully rescued in days following this method. Compared with other wild-type WNV isolates, rXJ11129 exhibited virulence indistinguishable from that of the NY99 strain in vivo. In summary, the genomic and virulence phenotypes of rXJ11129 were characterized in vivo and in vitro, and these data will improve the understanding of the spread and pathogenesis of this reemerging virus.

Keywords: Biological characteristic; GA method; Phylogenetic analysis; WNV isolates from China.

MeSH terms

  • China
  • Flavivirus
  • Humans
  • Phylogeny
  • West Nile Fever*
  • West Nile virus* / genetics