A transfer learning approach to facilitate ComBat-based harmonization of multicentre radiomic features in new datasets

PLoS One. 2021 Jul 1;16(7):e0253653. doi: 10.1371/journal.pone.0253653. eCollection 2021.

Abstract

Purpose: To facilitate the demonstration of the prognostic value of radiomics, multicenter radiomics studies are needed. Pooling radiomic features of such data in a statistical analysis is however challenging, as they are sensitive to the variability in scanner models, acquisition protocols and reconstruction settings, which is often unavoidable in a multicentre retrospective analysis. A statistical harmonization strategy called ComBat was utilized in radiomics studies to deal with the "center-effect". The goal of the present work was to integrate a transfer learning (TL) technique within ComBat-and recently developed alternate versions of ComBat with improved flexibility (M-ComBat) and robustness (B-ComBat)-to allow the use of a previously determined harmonization transform to the radiomic feature values of new patients from an already known center.

Material and methods: The proposed TL approach were incorporated in the four versions of ComBat (standard, B, M, and B-M ComBat). The proposed approach was evaluated using a dataset of 189 locally advanced cervical cancer patients from 3 centers, with magnetic resonance imaging (MRI) and positron emission tomography (PET) images, with the clinical endpoint of predicting local failure. The impact performance of the TL approach was evaluated by comparing the harmonization achieved using only parts of the data to the reference (harmonization achieved using all the available data). It was performed through three different machine learning pipelines.

Results: The proposed TL technique was successful in harmonizing features of new patients from a known center in all versions of ComBat, leading to predictive models reaching similar performance as the ones developed using the features harmonized with all the data available.

Conclusion: The proposed TL approach enables applying a previously determined ComBat transform to new, previously unseen data.

Publication types

  • Multicenter Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adult
  • Aged
  • Aged, 80 and over
  • Cervix Uteri / diagnostic imaging*
  • Cervix Uteri / pathology
  • Chemoradiotherapy / methods
  • Datasets as Topic
  • Decision Support Systems, Clinical / standards
  • Decision Support Systems, Clinical / statistics & numerical data
  • Female
  • Follow-Up Studies
  • Humans
  • Image Interpretation, Computer-Assisted / methods
  • Image Interpretation, Computer-Assisted / standards*
  • Image Interpretation, Computer-Assisted / statistics & numerical data
  • Machine Learning / standards*
  • Machine Learning / statistics & numerical data
  • Magnetic Resonance Imaging / standards
  • Magnetic Resonance Imaging / statistics & numerical data
  • Middle Aged
  • Positron-Emission Tomography / standards
  • Positron-Emission Tomography / statistics & numerical data
  • Retrospective Studies
  • Tomography, X-Ray Computed / standards
  • Tomography, X-Ray Computed / statistics & numerical data
  • Treatment Outcome
  • Uterine Cervical Neoplasms / diagnosis*
  • Uterine Cervical Neoplasms / therapy
  • Young Adult

Grants and funding

This study was funded by 766276 H2020 Marie Skłodowska-Curie Actions. There was no additional external funding received for this study.