Inherited IFNAR1 Deficiency in a Child with Both Critical COVID-19 Pneumonia and Multisystem Inflammatory Syndrome

J Clin Immunol. 2022 Apr;42(3):471-483. doi: 10.1007/s10875-022-01215-7. Epub 2022 Jan 28.

Abstract

Background: Inborn errors of immunity (IEI) and autoantibodies to type I interferons (IFNs) underlie critical COVID-19 pneumonia in at least 15% of the patients, while the causes of multisystem inflammatory syndrome in children (MIS-C) remain elusive.

Objectives: To detect causal genetic variants in very rare cases with concomitant critical COVID-19 pneumonia and MIS-C.

Methods: Whole exome sequencing was performed, and the impact of candidate gene variants was investigated. Plasma levels of cytokines, specific antibodies against the virus, and autoantibodies against type I IFNs were also measured.

Results: We report a 3-year-old child who died on day 56 of SARS-CoV-2 infection with an unusual clinical presentation, combining both critical COVID-19 pneumonia and MIS-C. We identified a large, homozygous loss-of-function deletion in IFNAR1, underlying autosomal recessive IFNAR1 deficiency.

Conclusions: Our findings confirm that impaired type I IFN immunity can underlie critical COVID-19 pneumonia, while suggesting that it can also unexpectedly underlie concomitant MIS-C. Our report further raises the possibility that inherited or acquired dysregulation of type I IFN immunity might contribute to MIS-C in other patients.

Keywords: COVID-19; IFNAR1; critical pneumonia; inborn errors of immunity (IEI); multisystem inflammatory syndrome in children (MIS-C); primary immunodeficiency (PID).

Publication types

  • Case Reports

MeSH terms

  • Autoantibodies
  • COVID-19* / complications
  • Child, Preschool
  • Cytokines
  • Humans
  • Interferon Type I*
  • Receptor, Interferon alpha-beta / genetics
  • SARS-CoV-2
  • Systemic Inflammatory Response Syndrome

Substances

  • Autoantibodies
  • Cytokines
  • IFNAR1 protein, human
  • Interferon Type I
  • Receptor, Interferon alpha-beta

Supplementary concepts

  • pediatric multisystem inflammatory disease, COVID-19 related