Autophagy deficiency abolishes liver mitochondrial DNA segregation

Autophagy. 2022 Oct;18(10):2397-2408. doi: 10.1080/15548627.2022.2038501. Epub 2022 Feb 27.

Abstract

Mutations in the mitochondrial genome (mtDNA) are ubiquitous in humans and can lead to a broad spectrum of disorders. However, due to the presence of multiple mtDNA molecules in the cell, co-existence of mutant and wild-type mtDNAs (termed heteroplasmy) can mask disease phenotype unless a threshold of mutant molecules is reached. Importantly, the mutant mtDNA level can change across lifespan as mtDNA segregates in an allele- and cell-specific fashion, potentially leading to disease. Segregation of mtDNA is mainly evident in hepatic cells, resulting in an age-dependent increase of mtDNA variants, including non-synonymous potentially deleterious mutations. Here we modeled mtDNA segregation using a well-established heteroplasmic mouse line with mtDNA of NZB/BINJ and C57BL/6N origin on a C57BL/6N nuclear background. This mouse line showed a pronounced age-dependent NZB mtDNA accumulation in the liver, thus leading to enhanced respiration capacity per mtDNA molecule. Remarkably, liver-specific atg7 (autophagy related 7) knockout abolished NZB mtDNA accumulat ion, resulting in close-to-neutral mtDNA segregation through development into adulthood. prkn (parkin RBR E3 ubiquitin protein ligase) knockout also partially prevented NZB mtDNA accumulation in the liver, but to a lesser extent. Hence, we propose that age-related liver mtDNA segregation is a consequence of macroautophagic clearance of the less-fit mtDNA. Considering that NZB/BINJ and C57BL/6N mtDNAs have a level of divergence comparable to that between human Eurasian and African mtDNAs, these findings have potential implications for humans, including the safe use of mitochondrial replacement therapy.Abbreviations: Apob: apolipoprotein B; Atg1: autophagy-related 1; Atg7: autophagy related 7; Atp5a1: ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1; BL6: C57BL/6N mouse strain; BNIP3: BCL2/adenovirus E1B interacting protein 3; FCCP: carbonyl cyanide 4-(trifluoromethoxy)phenylhydrazone; GAPDH: glyceraldehyde-3-phosphate dehydrogenase; MAP1LC3A: microtubule-associated protein 1 light chain 3 alpha; MAP1LC3B: microtubule-associated protein 1 light chain 3 beta; mt-Atp8: mitochondrially encoded ATP synthase 8; MT-CO1: mitochondrially encoded cytochrome c oxidase I; MT-CO2: mitochondrially encoded cytochrome c oxidase II; mt-Co3: mitochondrially encoded cytochrome c oxidase III; mt-Cytb: mitochondrially encoded cytochrome b; mtDNA: mitochondrial DNA; MUL1: mitochondrial ubiquitin ligase activator of NFKB 1; nDNA: nuclear DNA; Ndufa9: NADH:ubiquinone oxireductase subunit A9; NDUFB8: NADH:ubiquinone oxireductase subunit B8; Nnt: nicotinamide nucleotide transhydrogenase; NZB: NZB/BINJ mouse strain; OXPHOS: oxidative phosphorylation; PINK1: PTEN induced putative kinase 1; Polg2: polymerase (DNA directed), gamma 2, accessory subunit; Ppara: peroxisome proliferator activated receptor alpha; Ppia: peptidylprolyl isomerase A; Prkn: parkin RBR E3 ubiquitin protein ligase; P10: post-natal day 10; P21: post-natal day 21; P100: post-natal day 100; qPCR: quantitative polymerase chain reaction; Rpl19: ribosomal protein L19; Rps18: ribosomal protein S18; SD: standard deviation; SEM: standard error of the mean; SDHB: succinate dehydrogenase complex, subunit B, iron sulfur (Ip); SQSTM1: sequestosome 1; Ssbp1: single-stranded DNA binding protein 1; TFAM: transcription factor A, mitochondrial; Tfb1m: transcription factor B1, mitochondrial; Tfb2m: transcription factor B2, mitochondrial; TOMM20: translocase of outer mitochondrial membrane 20; UQCRC2: ubiquinol cytochrome c reductase core protein 2; WT: wild-type.

Keywords: Atg7; NZB; heteroplasmy; mitochondria; mitophagy; parkin.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, N.I.H., Extramural

MeSH terms

  • Adenosine Triphosphate
  • Adult
  • Animals
  • Apolipoproteins / metabolism
  • Apolipoproteins B / metabolism
  • Autophagy / genetics
  • Carbon Dioxide / metabolism
  • Carbonyl Cyanide p-Trifluoromethoxyphenylhydrazone
  • Cytochromes b / metabolism
  • DNA, Mitochondrial / genetics
  • DNA-Binding Proteins / metabolism
  • Electron Transport Complex III
  • Electron Transport Complex IV / metabolism
  • Humans
  • Iron / metabolism
  • Liver / metabolism
  • Mice
  • Mice, Inbred C57BL
  • Microtubule-Associated Proteins / genetics
  • Microtubule-Associated Proteins / metabolism
  • Mitochondrial Proteins
  • Mitophagy*
  • NAD / metabolism
  • NADP Transhydrogenases* / metabolism
  • PPAR alpha / metabolism
  • Peptidylprolyl Isomerase / metabolism
  • Protein Kinases / metabolism
  • Proto-Oncogene Proteins c-bcl-2 / metabolism
  • Ribosomal Proteins / metabolism
  • Sequestosome-1 Protein / metabolism
  • Succinate Dehydrogenase / metabolism
  • Sulfur / metabolism
  • Transcription Factors / metabolism
  • Ubiquinone
  • Ubiquitin-Protein Ligases / metabolism
  • Ubiquitins / metabolism

Substances

  • Apolipoproteins
  • Apolipoproteins B
  • DNA, Mitochondrial
  • DNA-Binding Proteins
  • Microtubule-Associated Proteins
  • Mitochondrial Proteins
  • PPAR alpha
  • Proto-Oncogene Proteins c-bcl-2
  • Ribosomal Proteins
  • SSBP1 protein, human
  • Sequestosome-1 Protein
  • Transcription Factors
  • Ubiquitins
  • NAD
  • Ubiquinone
  • Carbon Dioxide
  • Carbonyl Cyanide p-Trifluoromethoxyphenylhydrazone
  • Sulfur
  • Adenosine Triphosphate
  • Cytochromes b
  • Iron
  • Succinate Dehydrogenase
  • NADP Transhydrogenases
  • Electron Transport Complex IV
  • Ubiquitin-Protein Ligases
  • Protein Kinases
  • Peptidylprolyl Isomerase
  • Electron Transport Complex III