1 Department of Biological Sciences, Auburn University, Auburn, Alabama, USA.
2 United States Department of Agriculture, Agricultural Research Service, Aquatic Animal Health Research Unit, Auburn, Alabama, USA.
3 United States Department of Agriculture, Agricultural Research Service, Harry K. Dupree Stuttgart National Aquaculture Research Center, Stuttgart, Arkansas, USA.
Flavobacterium covae is one of four Flavobacterium spp. that cause columnaris disease in teleost fish. Here, we report the draft genomes of two isolates, LSU-066-04 and LV-359-01, and their predicted virulence factors.