Million spot binding array platform for exploring and optimizing multiple simultaneous detection events

STAR Protoc. 2022 Nov 8;3(4):101829. doi: 10.1016/j.xpro.2022.101829. eCollection 2022 Dec 16.

Abstract

Large-scale, high-throughput specificity assays to characterize binding properties within a competitive and complex environment of potential binder-target pairs remain challenging and cost prohibitive. Barcode cycle sequencing (BCS) is a molecular binding assay for proteins, peptides, and other small molecules that is built on a next-generation sequencing (NGS) chip. BCS uses a binder library and targets labeled with unique DNA barcodes. Upon binding, binder barcodes are ligated to target barcodes and sequenced to identify encoded binding events. For complete details on the use and execution of this protocol, please refer to Hong et al. (2022).

Keywords: Genomics; High throughput screening; Molecular biology; Sequencing.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • DNA Barcoding, Taxonomic* / methods
  • Gene Library
  • High-Throughput Nucleotide Sequencing* / methods
  • Sequence Analysis, DNA / methods