Intramolecular Hydrogen Bonding in N6-Substituted 2-Chloroadenosines: Evidence from NMR Spectroscopy

Int J Mol Sci. 2023 Jun 2;24(11):9697. doi: 10.3390/ijms24119697.

Abstract

Two forms were found in the NMR spectra of N6-substituted 2-chloroadenosines. The proportion of the mini-form was 11-32% of the main form. It was characterized by a separate set of signals in COSY, 15N-HMBC and other NMR spectra. We assumed that the mini-form arises due to the formation of an intramolecular hydrogen bond between the N7 atom of purine and the N6-CH proton of the substituent. The 1H,15N-HMBC spectrum confirmed the presence of a hydrogen bond in the mini-form of the nucleoside and its absence in the main form. Compounds incapable of forming such a hydrogen bond were synthesized. In these compounds, either the N7 atom of the purine or the N6-CH proton of the substituent was absent. The mini-form was not found in the NMR spectra of these nucleosides, confirming the importance of the intramolecular hydrogen bond in its formation.

Keywords: 2D NMR; N6 adenosine derivatives; hindered rotation; intramolecular hydrogen bond.

MeSH terms

  • 2-Chloroadenosine
  • Hydrogen Bonding
  • Magnetic Resonance Spectroscopy
  • Protons*

Substances

  • 2-Chloroadenosine
  • Protons