Clinical evaluation of deep learning-based risk profiling in breast cancer histopathology and comparison to an established multigene assay

Breast Cancer Res Treat. 2024 Jul;206(1):163-175. doi: 10.1007/s10549-024-07303-z. Epub 2024 Apr 9.

Abstract

Purpose: To evaluate the Stratipath Breast tool for image-based risk profiling and compare it with an established prognostic multigene assay for risk profiling in a real-world case series of estrogen receptor (ER)-positive and human epidermal growth factor receptor 2 (HER2)-negative early breast cancer patients categorized as intermediate risk based on classic clinicopathological variables and eligible for chemotherapy.

Methods: In a case series comprising 234 invasive ER-positive/HER2-negative tumors, clinicopathological data including Prosigna results and corresponding HE-stained tissue slides were retrieved. The digitized HE slides were analysed by Stratipath Breast.

Results: Our findings showed that the Stratipath Breast analysis identified 49.6% of the clinically intermediate tumors as low risk and 50.4% as high risk. The Prosigna assay classified 32.5%, 47.0% and 20.5% tumors as low, intermediate and high risk, respectively. Among Prosigna intermediate-risk tumors, 47.3% were stratified as Stratipath low risk and 52.7% as high risk. In addition, 89.7% of Stratipath low-risk cases were classified as Prosigna low/intermediate risk. The overall agreement between the two tests for low-risk and high-risk groups (N = 124) was 71.0%, with a Cohen's kappa of 0.42. For both risk profiling tests, grade and Ki67 differed significantly between risk groups.

Conclusion: The results from this clinical evaluation of image-based risk stratification shows a considerable agreement to an established gene expression assay in routine breast pathology.

Keywords: Breast cancer; Deep learning; Digital pathology; Gene expression profiling; Prosigna.

Publication types

  • Comparative Study

MeSH terms

  • Adult
  • Aged
  • Biomarkers, Tumor* / genetics
  • Breast Neoplasms* / genetics
  • Breast Neoplasms* / pathology
  • Deep Learning*
  • Female
  • Gene Expression Profiling / methods
  • Humans
  • Middle Aged
  • Prognosis
  • Receptor, ErbB-2* / genetics
  • Receptor, ErbB-2* / metabolism
  • Receptors, Estrogen* / metabolism
  • Risk Assessment / methods

Substances

  • Biomarkers, Tumor
  • Receptor, ErbB-2
  • Receptors, Estrogen
  • ERBB2 protein, human