Evaluation of short-term hair follicle storage conditions for maintenance of RNA integrity

PLoS One. 2024 May 31;19(5):e0294089. doi: 10.1371/journal.pone.0294089. eCollection 2024.

Abstract

Hair follicles provide an easily accessible tissue for interrogating gene expression for multiple purposes in mammals. RNAlater® is a liquid storage solution that stabilises and preserves cellular RNA, eliminating the need to immediately process or freeze tissue specimens. The manufacturer advises storage of samples at 2-8°C overnight before transfer to -20°C. This study aimed to evaluate RNA integrity in hair follicle samples collected from horses, stabilized in RNAlater®, and stored under three short-term storage conditions. Mane hair samples complete with follicles were collected from four horses at a single time point. Approximately 15 hairs were placed in each of three 2 mL tubes containing 0.75ml RNAlater® solution. Test group A was stored at 4°C for 24-h, then decanted and stored at -20°C. Test groups B and C were stored at 4°C and 19°C (room temperature) respectively for 7 days, then decanted and stored at -20°C. RNA was isolated from all samples and RNA quantity and quality were measured. One-way ANOVA revealed no difference in RNA concentration (A:516 +/-125 ng/ml, B:273+/-93 ng/ml, C:476+/-176 ng/ml;P = 0.2) or quality (A:9.5 +/-0.19, B:9.8+/-0.09, C:9.2+/-0.35 RIN; P = 0.46) between the test groups. There were no group differences in mean Cycle Threshold values from qPCR validation assays confirming high-quality template cDNA. The results suggest that storage of hair follicles for one week in RNAlater® at cool or room temperature conditions will not compromise RNA integrity and will permit extended transport times from remote sampling locations without the need for freezing.

MeSH terms

  • Animals
  • Cryopreservation / methods
  • Hair Follicle* / metabolism
  • Horses
  • RNA Stability*
  • RNA* / analysis
  • RNA* / genetics
  • Specimen Handling / methods
  • Temperature
  • Time Factors

Substances

  • RNA

Grants and funding

Funding was received from the Morris Animal Foundation (Colorado, USA). The author BAM is a collaborator on grant number D22EQ-514 awarded to Hartpury University (Gloucestershire, UK). The URL of the funder’s website is https://www.morrisanimalfoundation.org/. The funders did not play any role in the study design, data collection and analysis, decision to publish or preparation of the manuscript.