Controlling the two-dimensional polymerization processes of two-dimensional covalent organic frameworks (2D COFs) is essential to fully realizing their distinct properties. Although most 2D COFs have been isolated as polycrystalline aggregates with only nanometer-scale crystalline domains, we have identified rapid, solvothermal conditions that provide micrometer-scale and larger single-crystal 2D polymers for a few 2D COFs. Yet it remains unclear why certain conditions produce far larger 2D polymers than others, which hinders generalizing these findings. The guiding principles for controlled two-dimensional polymerization in solution remain unclear. Here, we study the crystallization processes of both single-crystalline and polycrystalline 2D COFs using ultrasmall-angle X-ray scattering (USAXS) for the first time, through which we characterized COF formation conditions with scattering data collected every few seconds. In situ USAXS experiments revealed distinct growth mechanisms between single-crystalline and polycrystalline COFs and suggested a nonclassical particle fusion-based growth model for single-crystalline COFs that results in faceted, hexagonal particles. These findings were corroborated by in situ wide-angle X-ray scattering (WAXS) experiments and scanning electron microscopy (SEM). In contrast, polymerizations that provide polycrystalline COFs evolve as spherical aggregates that do not fuse in the same way. These insights into how micrometer-sized, crystalline 2D polymers are formed in solution point a way forward to establishing a robust connection between the 2D polymer structure and designed properties by controlling their polymerization processes.