The origin of esterase activity of Parkinson's disease causative factor DJ-1 implied by evolutionary trace analysis of its prokaryotic homolog HchA

J Biol Chem. 2024 Jul;300(7):107476. doi: 10.1016/j.jbc.2024.107476. Epub 2024 Jun 13.

Abstract

DJ-1, a causative gene for hereditary recessive Parkinsonism, is evolutionarily conserved across eukaryotes and prokaryotes. Structural analyses of DJ-1 and its homologs suggested the 106th Cys is a nucleophilic cysteine functioning as the catalytic center of hydratase or hydrolase activity. Indeed, DJ-1 and its homologs can convert highly electrophilic α-oxoaldehydes such as methylglyoxal into α-hydroxy acids as hydratase in vitro, and oxidation-dependent ester hydrolase (esterase) activity has also been reported for DJ-1. The mechanism underlying such plural activities, however, has not been fully characterized. To address this knowledge gap, we conducted a series of biochemical assays assessing the enzymatic activity of DJ-1 and its homologs. We found no evidence for esterase activity in any of the Escherichia coli DJ-1 homologs. Furthermore, contrary to previous reports, we found that oxidation inactivated rather than facilitated DJ-1 esterase activity. The E. coli DJ-1 homolog HchA possesses phenylglyoxalase and methylglyoxalase activities but lacks esterase activity. Since evolutionary trace analysis identified the 186th H as a candidate residue involved in functional differentiation between HchA and DJ-1, we focused on H186 of HchA and found that an esterase activity was acquired by H186A mutation. Introduction of reverse mutations into the equivalent position in DJ-1 (A107H) selectively eliminated its esterase activity without compromising α-oxoaldehyde hydratase activity. The obtained results suggest that differences in the amino acid sequences near the active site contributed to acquisition of esterase activity in vitro and provide an important clue to the origin and significance of DJ-1 esterase activity.

Keywords: DJ-1; PARK7; Parkinson disease (PD); catalytic triad; esterase; hydratase; oxo-aldehyde; prokaryote.

MeSH terms

  • Escherichia coli Proteins / chemistry
  • Escherichia coli Proteins / genetics
  • Escherichia coli Proteins / metabolism
  • Escherichia coli* / genetics
  • Escherichia coli* / metabolism
  • Esterases / chemistry
  • Esterases / genetics
  • Esterases / metabolism
  • Evolution, Molecular
  • Humans
  • Oxidation-Reduction
  • Parkinson Disease* / genetics
  • Parkinson Disease* / metabolism
  • Protein Deglycase DJ-1* / chemistry
  • Protein Deglycase DJ-1* / genetics
  • Protein Deglycase DJ-1* / metabolism

Substances

  • Protein Deglycase DJ-1
  • Esterases
  • Escherichia coli Proteins
  • PARK7 protein, human