Protein-Protein Stabilization in VIVO/8-Hydroxyquinoline-Lysozyme Adducts

Chemistry. 2024 Oct 1;30(55):e202401712. doi: 10.1002/chem.202401712. Epub 2024 Sep 16.

Abstract

The binding of the potential drug [VIVO(8-HQ)2], where 8-HQ is 8-hydroxyquinolinato, with hen egg white lysozyme (HEWL) was evaluated through spectroscopic (electron paramagnetic resonance, EPR, and UV-visible), spectrometric (electrospray ionization-mass spectrometry, ESI-MS), crystallographic (X-ray diffraction, XRD), and computational (DFT and docking) studies. ESI-MS indicates the interaction of [VIVO(8-HQ)(H2O)]+ and [VIVO(8-HQ)2(H2O)] species with HEWL. Room temperature EPR spectra suggest both covalent and non-covalent binding of the two different V-containing fragments. XRD analyses confirm these findings, showing that [VIVO(8-HQ)(H2O)]+ interacts covalently with the solvent exposed Asp119, while cis-[VIVO(8-HQ)2(H2O)] non-covalently with Arg128 and Lys96 from a symmetry mate. The covalent binding of [VIVO(8-HQ)(H2O)]+ to Asp119 is favored by a π-π contact with Trp62 and a H-bond with Asn103 of a symmetry-related molecule. Additionally, the covalent binding of VVO2 + to Asp48 and non-covalent binding of other V-containing fragments to Arg5, Cys6, and Glu7 are revealed. Molecular docking indicates that, in the absence of the interactions occurring at the protein-protein interface close to Asp119, the covalent binding to Glu35 or Asp52 should be preferred. Such a protein-protein stabilization could be more common than what believed up today, at least in the solid state, and should be considered in the characterization of metal-protein adducts.

Keywords: ESI-MS spectrometry; V-based drugs; V-protein adducts; X-ray crystallography; computational calculations.

MeSH terms

  • Animals
  • Binding Sites
  • Chickens
  • Crystallography, X-Ray
  • Electron Spin Resonance Spectroscopy
  • Hydrogen Bonding
  • Molecular Docking Simulation*
  • Muramidase* / chemistry
  • Muramidase* / metabolism
  • Oxyquinoline* / chemistry
  • Protein Binding
  • Protein Stability
  • Spectrometry, Mass, Electrospray Ionization

Substances

  • Muramidase
  • hen egg lysozyme
  • Oxyquinoline