A phylogeny-informed characterisation of global tetrapod traits addresses data gaps and biases

PLoS Biol. 2024 Jul 11;22(7):e3002658. doi: 10.1371/journal.pbio.3002658. eCollection 2024 Jul.

Abstract

Tetrapods (amphibians, reptiles, birds, and mammals) are model systems for global biodiversity science, but continuing data gaps, limited data standardisation, and ongoing flux in taxonomic nomenclature constrain integrative research on this group and potentially cause biased inference. We combined and harmonised taxonomic, spatial, phylogenetic, and attribute data with phylogeny-based multiple imputation to provide a comprehensive data resource (TetrapodTraits 1.0.0) that includes values, predictions, and sources for body size, activity time, micro- and macrohabitat, ecosystem, threat status, biogeography, insularity, environmental preferences, and human influence, for all 33,281 tetrapod species covered in recent fully sampled phylogenies. We assess gaps and biases across taxa and space, finding that shared data missing in attribute values increased with taxon-level completeness and richness across clades. Prediction of missing attribute values using multiple imputation revealed substantial changes in estimated macroecological patterns. These results highlight biases incurred by nonrandom missingness and strategies to best address them. While there is an obvious need for further data collection and updates, our phylogeny-informed database of tetrapod traits can support a more comprehensive representation of tetrapod species and their attributes in ecology, evolution, and conservation research.

MeSH terms

  • Amphibians
  • Animals
  • Bias
  • Biodiversity*
  • Birds*
  • Body Size
  • Ecosystem
  • Humans
  • Mammals*
  • Phylogeny*
  • Reptiles* / classification

Grants and funding

We gratefully acknowledge São Paulo Research Foundation (FAPESP) for grants supporting MRM (#2021/11840-6 and #2022/12231-6), LFT (#2016/25358-3), KC (#2020/12558-0), and RZC (#2022/15247-0); Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) for the fellowship to JJMG; Conselho Nacional de Desenvolvimento Científico - CNPq for research grants in support of FPW (#311504/2020-5) and LFT (#302834/2020-6); U.S. National Science Foundation (NSF) for grants supporting RCKB (DEB-1441652), RAP (DEB-1441719), and WJ (DEB-1441737 and DEB-1441719). WJ also acknowledges support from NASA grants 80NSSC17K0282 and 80NSSC18K0435. This work was partially supported by E.O. Wilson Biodiversity Foundation in furtherance of the Half-Earth Project. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.