Gas-sensing riboceptors

RNA Biol. 2024 Jan;21(1):1-6. doi: 10.1080/15476286.2024.2379607. Epub 2024 Jul 17.

Abstract

Understanding how cells sense gases or gaseous solutes is a fundamental question in biology and is pivotal for the evolution of molecular and organismal life. In numerous organisms, gases can diffuse into cells, be transported, generated, and sensed. Controlling gases in the cellular environment is essential to prevent cellular and molecular damage due to interactions with gas-dependent free radicals. Consequently, the mechanisms governing acute gas sensing are evolutionarily conserved and have been experimentally elucidated in various organisms. However, the scientific literature on direct gas sensing is largely based on hemoprotein-based gasoreceptors (or sensors). As RNA-based G-quadruplex (G4) structures can also bind to heme, I propose that some ribozymes can act as gas-sensing riboceptors (ribonucleic acid receptors). Additionally, I present a few other ideas for non-heme metal ion- or metal cluster-based gas-sensing riboceptors. Studying riboceptors can help understand the evolutionary origins of cellular and gasocrine signaling.

Keywords: G-quadruplex; Gas sensing; RNA-based receptor; gasoreceptors; haem; ribozyme; riboceptor; gascorine signaling.

MeSH terms

  • Animals
  • G-Quadruplexes
  • Gases* / chemistry
  • Gases* / metabolism
  • Heme / chemistry
  • Heme / metabolism
  • Humans
  • RNA, Catalytic / metabolism
  • Signal Transduction

Substances

  • Gases
  • Heme
  • RNA, Catalytic

Grants and funding

S.A. is supported by National Science Centre grants [SONATA-BIS 2020/38/E/NZ3/00090 and SONATA 2021/43/D/NZ3/01798].