WTAP and METTL14 regulate the m6A modification of DKK3 in renal tubular epithelial cells of diabetic nephropathy

Biochem Biophys Res Commun. 2024 Dec 17:738:150524. doi: 10.1016/j.bbrc.2024.150524. Epub 2024 Aug 9.

Abstract

Diabetic nephropathy (DN) is an important cause of death in diabetes patients, which is mainly due to its complex pathogenesis. Here, we explored the role of N6-methyladenosine (m6A) RNA methylation in DN development. Renal tubular epithelial cells from DN patients and experimental DN mice treated with streptozotocin (STZ) exhibited a considerable increase in METTL14 and WTAP expression as well as overall m6A methylation. Knocking down the expression of METTL14 and WTAP inhibited the migration and proliferation of tubular epithelial cells. MeRIP-seq analysis of the renal tissues of DN patients revealed that the genes with elevated m6A methylation were concentrated in the Wnt/β-Catenin signaling pathway. Dickkopf homolog 3 (DKK3) was screened out as the gene with the most significant increase in m6A methylation. In addition, the expression change pattern of DKK3 under DN circumstances is in line with those of METTL14 and WTAP. DKK3's m6A methylation sites were confirmed to be located in the 3'UTR region, which is how METTL14 and WTAP improved DKK3's mRNA stability. Finally, YTHDF1, a m6A reader, was demonstrated to recognize m6A-methylated DKK3 and promote DKK3 expression.

Keywords: Biomarker; DKK3; Diabetic nephropathy; METTL14; WTAP; m6A.

MeSH terms

  • Adaptor Proteins, Signal Transducing* / genetics
  • Adaptor Proteins, Signal Transducing* / metabolism
  • Adenosine* / analogs & derivatives
  • Adenosine* / metabolism
  • Animals
  • Cell Cycle Proteins
  • Cell Movement
  • Cell Proliferation
  • Diabetes Mellitus, Experimental / genetics
  • Diabetes Mellitus, Experimental / metabolism
  • Diabetes Mellitus, Experimental / pathology
  • Diabetic Nephropathies* / genetics
  • Diabetic Nephropathies* / metabolism
  • Diabetic Nephropathies* / pathology
  • Epithelial Cells* / metabolism
  • Epithelial Cells* / pathology
  • Humans
  • Intercellular Signaling Peptides and Proteins / genetics
  • Intercellular Signaling Peptides and Proteins / metabolism
  • Kidney Tubules* / metabolism
  • Kidney Tubules* / pathology
  • Male
  • Methylation
  • Methyltransferases* / genetics
  • Methyltransferases* / metabolism
  • Mice
  • Mice, Inbred C57BL
  • Nephroblastoma Overexpressed Protein / genetics
  • Nephroblastoma Overexpressed Protein / metabolism
  • RNA Splicing Factors

Substances

  • METTL14 protein, human
  • Methyltransferases
  • DKK3 protein, human
  • Adaptor Proteins, Signal Transducing
  • Adenosine
  • N-methyladenosine
  • WTAP protein, human
  • Intercellular Signaling Peptides and Proteins
  • Dkk3 protein, mouse
  • Mettl14 protein, mouse
  • Nephroblastoma Overexpressed Protein
  • RNA Splicing Factors
  • Cell Cycle Proteins