Multi-omics profiling of retinal pigment epithelium reveals enhancer-driven activation of RANK-NFATc1 signaling in traumatic proliferative vitreoretinopathy

Nat Commun. 2024 Aug 25;15(1):7324. doi: 10.1038/s41467-024-51624-y.

Abstract

During the progression of proliferative vitreoretinopathy (PVR) following ocular trauma, previously quiescent retinal pigment epithelial (RPE) cells transition into a state of rapid proliferation, migration, and secretion. The elusive molecular mechanisms behind these changes have hindered the development of effective pharmacological treatments, presenting a pressing clinical challenge. In this study, by monitoring the dynamic changes in chromatin accessibility and various histone modifications, we chart the comprehensive epigenetic landscape of RPE cells in male mice subjected to traumatic PVR. Coupled with transcriptomic analysis, we reveal a robust correlation between enhancer activation and the upregulation of the PVR-associated gene programs. Furthermore, by constructing transcription factor regulatory networks, we identify the aberrant activation of enhancer-driven RANK-NFATc1 pathway as PVR advanced. Importantly, we demonstrate that intraocular interventions, including nanomedicines inhibiting enhancer activity, gene therapies targeting NFATc1 and antibody therapeutics against RANK pathway, effectively mitigate PVR progression. Together, our findings elucidate the epigenetic basis underlying the activation of PVR-associated genes during RPE cell fate transitions and offer promising therapeutic avenues targeting epigenetic modulation and the RANK-NFATc1 axis for PVR management.

MeSH terms

  • Animals
  • Disease Models, Animal
  • Enhancer Elements, Genetic / genetics
  • Epigenesis, Genetic
  • Eye Injuries / genetics
  • Eye Injuries / metabolism
  • Eye Injuries / pathology
  • Gene Expression Profiling
  • Humans
  • Male
  • Mice
  • Mice, Inbred C57BL
  • Multiomics
  • NFATC Transcription Factors* / genetics
  • NFATC Transcription Factors* / metabolism
  • Retinal Pigment Epithelium* / metabolism
  • Signal Transduction*
  • Vitreoretinopathy, Proliferative* / genetics
  • Vitreoretinopathy, Proliferative* / metabolism
  • Vitreoretinopathy, Proliferative* / pathology

Substances

  • NFATC Transcription Factors
  • Nfatc1 protein, mouse