MUT-7 exoribonuclease activity and localization are mediated by an ancient domain

Nucleic Acids Res. 2024 Aug 27;52(15):9076-9091. doi: 10.1093/nar/gkae610.

Abstract

The MUT-7 family of 3'-5' exoribonucleases is evolutionarily conserved across the animal kingdom and plays essential roles in small RNA production in the germline. Most MUT-7 homologues carry a C-terminal domain of unknown function named MUT7-C appended to the exoribonuclease domain. Our analysis shows that the MUT7-C is evolutionary ancient, as a minimal version of the domain exists as an individual protein in prokaryotes. In animals, MUT7-C has acquired an insertion that diverged during evolution, expanding its functions. Caenorhabditis elegans MUT-7 contains a specific insertion within MUT7-C, which allows binding to MUT-8 and, consequently, MUT-7 recruitment to germ granules. In addition, in C. elegans and human MUT-7, the MUT7-C domain contributes to RNA binding and is thereby crucial for ribonuclease activity. This RNA-binding function most likely represents the ancestral function of the MUT7-C domain. Overall, this study sheds light on MUT7-C and assigns two functions to this previously uncharacterized domain.

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Caenorhabditis elegans Proteins* / chemistry
  • Caenorhabditis elegans Proteins* / genetics
  • Caenorhabditis elegans Proteins* / metabolism
  • Caenorhabditis elegans* / enzymology
  • Caenorhabditis elegans* / genetics
  • Evolution, Molecular
  • Exoribonucleases* / chemistry
  • Exoribonucleases* / genetics
  • Exoribonucleases* / metabolism
  • Humans
  • Protein Binding
  • Protein Domains*
  • RNA / chemistry
  • RNA / metabolism

Substances

  • Exoribonucleases
  • Caenorhabditis elegans Proteins
  • RNA