Structural insights into Semiliki forest virus receptor binding modes indicate novel mechanism of virus endocytosis

PLoS Pathog. 2024 Dec 20;20(12):e1012770. doi: 10.1371/journal.ppat.1012770. eCollection 2024 Dec.

Abstract

The Very Low-Density Lipoprotein Receptor (VLDLR) is an entry receptor for the prototypic alphavirus Semliki Forest Virus (SFV). However, the precise mechanisms underlying the entry of SFV into cells mediated by VLDLR remain unclear. In this study, we found that of the eight class A (LA) repeats of the VLDLR, only LA2, LA3, and LA5 specifically bind to the native SFV virion while synergistically promoting SFV cell attachment and entry. Furthermore, the multiple cryo-electron microscopy structures of VLDLR-SFV complexes and mutagenesis studies have demonstrated that under physiological conditions, VLDLR primarily binds to E1-DIII of site-1, site-2, and site-1' at the twofold symmetry axes of SFV virion through LA2, LA3, and LA5, respectively. These findings unveil a novel mechanism for viral entry mediated by receptors, suggesting that conformational transitions in VLDLR induced by multivalent binding of LAs facilitate cellular internalization of SFV, with significant implications for the design of antiviral therapeutics.

MeSH terms

  • Alphavirus Infections / metabolism
  • Alphavirus Infections / virology
  • Animals
  • Cryoelectron Microscopy
  • Endocytosis / physiology
  • Humans
  • Protein Binding
  • Receptors, LDL* / metabolism
  • Receptors, Virus* / metabolism
  • Semliki forest virus* / metabolism
  • Semliki forest virus* / physiology
  • Virion / metabolism
  • Virus Internalization*

Substances

  • Receptors, LDL
  • Receptors, Virus
  • VLDL receptor

Grants and funding

This work was supported by the National Key Research and Development Program of China (2023YFC2605001 to JW), the National Natural Science Foundation of China (32272980 to JW; 32270179 to NW), the Central Public-Interest Scientific Institution Basal Research Fund (Y2023LM07 to JW; 1610302023002 to DY), and the Agricultural Science and Technology Innovation Program (HVRI-ZDRW202001 to JW). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.