The template RNAs of RNA polymerases can have compact secondary structure, formed by long double helices with partial violations of the complementarity

FEBS Lett. 1984 Jan 2;165(1):72-8. doi: 10.1016/0014-5793(84)80017-4.

Abstract

A new method of contextual analysis was used to search the long non-random inverted repeats and the complementary palindromes in the genes of E. coli and T7 RNA polymerases. These genes were found to contain from 25% to 50% of all the nucleotides involved in such helices. The 5' -and 3' -ends of mRNA can be protected by neighbouring double helices from the nuclease attack. Some double helices are competing and very similar to the attenuator of E. coli trp-operon.

MeSH terms

  • Base Composition
  • DNA-Directed RNA Polymerases / genetics*
  • Escherichia coli / enzymology*
  • Nucleic Acid Conformation*
  • Probability
  • RNA, Bacterial
  • RNA, Messenger*
  • RNA, Viral
  • T-Phages / enzymology*

Substances

  • RNA, Bacterial
  • RNA, Messenger
  • RNA, Viral
  • DNA-Directed RNA Polymerases