Hinge-bending in L-arabinose-binding protein. The "Venus's-flytrap" model

J Biol Chem. 1982 Feb 10;257(3):1131-3.

Abstract

Theoretical conformational energy calculations show that large changes in the width of the binding-site cleft in the L-arabinose-binding protein involve only modest changes in the protein internal energy. Solvation energy changes associated with such variations of the cleft width and with protein-ligand interactions are estimated to be significantly larger than the internal energy changes. These results indicate that the binding-site cleft is open in the unliganded protein and is induced to close upon ligation. This picture is consistent with experimental data on the structure and binding kinetics of the L-arabinose-binding protein and provides a physical framework for interpreting such data.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Bacterial Proteins*
  • Binding Sites
  • Carrier Proteins*
  • Escherichia coli / analysis
  • Escherichia coli Proteins
  • Models, Molecular
  • Protein Conformation

Substances

  • AraF protein, E coli
  • Bacterial Proteins
  • Carrier Proteins
  • Escherichia coli Proteins