A dominant negative mutation in the conserved RNA helicase motif 'SAT' causes splicing factor PRP2 to stall in spliceosomes

EMBO J. 1994 Feb 15;13(4):879-87. doi: 10.1002/j.1460-2075.1994.tb06331.x.

Abstract

To characterize sequences in the RNA helicase-like PRP2 protein of Saccharomyces cerevisiae that are essential for its function in pre-mRNA splicing, a pool of random PRP2 mutants was generated. A dominant negative allele was isolated which, when overexpressed in a wild-type yeast strain, inhibited cell growth by causing a defect in pre-mRNA splicing. This defect was partially alleviated by simultaneous co-overexpression of wild-type PRP2. The dominant negative PRP2 protein inhibited splicing in vitro and caused the accumulation of stalled splicing complexes. Immunoprecipitation with anti-PRP2 antibodies confirmed that dominant negative PRP2 protein competed with its wild-type counterpart for interaction with spliceosomes, with which the mutant protein remained associated. The PRP2-dn1 mutation led to a single amino acid change within the conserved SAT motif that in the prototype helicase eIF-4A is required for RNA unwinding. Purified dominant negative PRP2 protein had approximately 40% of the wild-type level of RNA-stimulated ATPase activity. As ATPase activity was reduced only slightly, but splicing activity was abolished, we propose that the dominant negative phenotype is due primarily to a defect in the putative RNA helicase activity of PRP2 protein.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Chromatography, Affinity
  • Conserved Sequence
  • DEAD-box RNA Helicases
  • Electrophoresis, Polyacrylamide Gel
  • Fungal Proteins / genetics
  • Fungal Proteins / isolation & purification
  • Fungal Proteins / metabolism*
  • Genes, Dominant*
  • Leucine / genetics
  • Molecular Sequence Data
  • Mutation*
  • Oligodeoxyribonucleotides
  • RNA Helicases
  • RNA Nucleotidyltransferases / genetics*
  • RNA Splicing*
  • Saccharomyces cerevisiae
  • Saccharomyces cerevisiae Proteins*
  • Serine / genetics
  • Spliceosomes / metabolism*

Substances

  • Fungal Proteins
  • Oligodeoxyribonucleotides
  • Saccharomyces cerevisiae Proteins
  • Serine
  • RNA Nucleotidyltransferases
  • PRP2 protein, S cerevisiae
  • DEAD-box RNA Helicases
  • RNA Helicases
  • Leucine