An M13 phage library displaying random 38-amino-acid peptides as a source of novel sequences with affinity to selected targets

Gene. 1993 Jun 15;128(1):59-65. doi: 10.1016/0378-1119(93)90153-t.

Abstract

We have examined the potential of isolating novel ligands from a library of M13 pIII-fusion phage displaying peptides composed of 38 random amino acids (aa). The library was panned with streptavidin (SA) and a polyclonal goat antimouse IgG Fc antibody (Ab) preparation coupled to paramagnetic beads. SA selected two classes of phage from the library. One class exhibited the aa motif, HP(Q/M) theta (where theta signifies a non-polar aa), similar to the motif identified by Devlin et al. [Science 249 (1990) 404-406] using a 15-aa random peptide library displayed on phage. The other class of phage had no discernible motif. In binding experiments, the non-HP(Q/M) theta phage had a slightly higher affinity for SA than did the motif phage. Both classes of SA-binding phage failed to bind native and non-glycosylated forms of avidin, even though SA and avidin are structurally similar and both proteins possess extraordinary affinities for biotin. The polyclonal goat anti-mouse IgG Fc Ab preparation selected phage displaying sequences similar to a region of the mouse IgG Fc. Thus, a single immunodominant epitope on the mouse IgG Fc was identified. Furthermore, a second phage displaying peptides with no discernible sequence similarities to mouse IgG Fc was isolated. Thus, an M13 library displaying 38-aa peptides can yield phage with affinity for various targets. Finally, we have observed a biological bias against odd numbers of Cys residues in the displayed peptides.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Bacterial Proteins / metabolism
  • Bacteriophage M13 / genetics*
  • Base Sequence
  • Binding Sites
  • Cloning, Molecular / methods
  • Cysteine / metabolism
  • Disulfides / metabolism
  • Goats / immunology
  • Immunoglobulin Fc Fragments
  • Immunoglobulin G
  • Molecular Sequence Data
  • Oligodeoxyribonucleotides
  • Peptides / analysis*
  • Peptides / metabolism
  • Recombinant Fusion Proteins / biosynthesis
  • Recombinant Fusion Proteins / metabolism*
  • Streptavidin

Substances

  • Bacterial Proteins
  • Disulfides
  • Immunoglobulin Fc Fragments
  • Immunoglobulin G
  • Oligodeoxyribonucleotides
  • Peptides
  • Recombinant Fusion Proteins
  • Streptavidin
  • Cysteine