Determination of serotypes of astroviruses by reverse transcription-polymerase chain reaction and homologies of the types by the sequencing of Japanese isolates

Microbiol Immunol. 1998;42(8):539-47. doi: 10.1111/j.1348-0421.1998.tb02322.x.

Abstract

Human standard astroviruses, serotypes 1 to 7, and 35 Japanese isolates were typed by reverse transcription and polymerase chain reaction (RT-PCR) with serotype-specific primers for the first time. The results were identical with those obtained by enzyme immunoassay with serotype-specific polyclonal antibodies, a method which has already been reported. RT-PCR with serotype-specific primers is useful for epidemiological studies of astroviruses where serotype-specific polyclonal antibodies are not available. Two parts of the capsid region, N terminus and C terminus, were sequenced. Serotypes differed in those regions. The N terminus differed less than the C terminus between serotypes. Both the N terminus and C terminus were similar intraserotypically with the exception of serotype-4 isolates which could be divided into A and B subgroups on the basis of their C terminus sequences, which were not known previously.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Astroviridae Infections / epidemiology
  • Astroviridae Infections / virology*
  • Base Sequence
  • Capsid / genetics
  • DNA Primers
  • Diarrhea / virology
  • Feces / virology
  • Humans
  • Immunoenzyme Techniques
  • Japan / epidemiology
  • Mamastrovirus / classification*
  • Mamastrovirus / genetics
  • Mamastrovirus / isolation & purification
  • Molecular Sequence Data
  • RNA, Viral / analysis
  • RNA, Viral / isolation & purification
  • Reverse Transcriptase Polymerase Chain Reaction / methods*
  • Sequence Analysis, DNA
  • Sequence Homology, Amino Acid
  • Sequence Homology, Nucleic Acid
  • Serotyping

Substances

  • DNA Primers
  • RNA, Viral

Associated data

  • GENBANK/AB000283
  • GENBANK/AB000288
  • GENBANK/AB000291
  • GENBANK/AB000296
  • GENBANK/AB000297
  • GENBANK/AB000300