Carmack C - Search Results

1

Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes.

McCue L, Thompson W, Carmack C, Ryan MP, Liu JS, Derbyshire V, Lawrence CE. McCue L, et al. Among authors: carmack c. Nucleic Acids Res. 2001 Feb 1;29(3):774-82. doi: 10.1093/nar/29.3.774. Nucleic Acids Res. 2001. PMID: 11160901 Free PMC article.

2

Factors influencing the identification of transcription factor binding sites by cross-species comparison.

McCue LA, Thompson W, Carmack CS, Lawrence CE. McCue LA, et al. Among authors: carmack cs. Genome Res. 2002 Oct;12(10):1523-32. doi: 10.1101/gr.323602. Genome Res. 2002. PMID: 12368244 Free PMC article.

3

PhyloScan: identification of transcription factor binding sites using cross-species evidence.

Carmack CS, McCue LA, Newberg LA, Lawrence CE. Carmack CS, et al. Algorithms Mol Biol. 2007 Jan 23;2:1. doi: 10.1186/1748-7188-2-1. Algorithms Mol Biol. 2007. PMID: 17244358 Free PMC article.

4

CLIP-based prediction of mammalian microRNA binding sites.

Liu C, Mallick B, Long D, Rennie WA, Wolenc A, Carmack CS, Ding Y. Liu C, et al. Among authors: carmack cs. Nucleic Acids Res. 2013 Aug;41(14):e138. doi: 10.1093/nar/gkt435. Epub 2013 May 22. Nucleic Acids Res. 2013. PMID: 23703212 Free PMC article.

5

STarMir: a web server for prediction of microRNA binding sites.

Rennie W, Liu C, Carmack CS, Wolenc A, Kanoria S, Lu J, Long D, Ding Y. Rennie W, et al. Among authors: carmack cs. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W114-8. doi: 10.1093/nar/gku376. Epub 2014 May 6. Nucleic Acids Res. 2014. PMID: 24803672 Free PMC article.

STarMir is an implementation of logistic prediction models developed with miRNA binding data from crosslinking immunoprecipitation (CLIP) studies (Liu,C., Mallick, B., Long, D., Rennie, W.A., Wolenc, A., Carmack, C.S. and Ding, Y. (2013). ...

STarMir is an implementation of logistic prediction models developed with miRNA binding data from crosslinking immunoprecipitation (CLIP) st …

6

Identification of bacterial sRNA regulatory targets using ribosome profiling.

Wang J, Rennie W, Liu C, Carmack CS, Prévost K, Caron MP, Massé E, Ding Y, Wade JT. Wang J, et al. Among authors: carmack cs. Nucleic Acids Res. 2015 Dec 2;43(21):10308-20. doi: 10.1093/nar/gkv1158. Epub 2015 Nov 5. Nucleic Acids Res. 2015. PMID: 26546513 Free PMC article.

7

MicroRNA binding sites in C. elegans 3' UTRs.

Liu C, Rennie WA, Mallick B, Kanoria S, Long D, Wolenc A, Carmack CS, Ding Y. Liu C, et al. Among authors: carmack cs. RNA Biol. 2014;11(6):693-701. doi: 10.4161/rna.28868. Epub 2014 Apr 25. RNA Biol. 2014. PMID: 24827614 Free PMC article.

8

STarMirDB: A database of microRNA binding sites.

Rennie W, Kanoria S, Liu C, Mallick B, Long D, Wolenc A, Carmack CS, Lu J, Ding Y. Rennie W, et al. Among authors: carmack cs. RNA Biol. 2016 Jun 2;13(6):554-60. doi: 10.1080/15476286.2016.1182279. RNA Biol. 2016. PMID: 27144897 Free PMC article.

9

Effects of genetic variations on microRNA: target interactions.

Liu C, Rennie WA, Carmack CS, Kanoria S, Cheng J, Lu J, Ding Y. Liu C, et al. Among authors: carmack cs. Nucleic Acids Res. 2014 Sep;42(15):9543-52. doi: 10.1093/nar/gku675. Epub 2014 Jul 31. Nucleic Acids Res. 2014. PMID: 25081214 Free PMC article.

10

STarMir Tools for Prediction of microRNA Binding Sites.

Kanoria S, Rennie W, Liu C, Carmack CS, Lu J, Ding Y. Kanoria S, et al. Among authors: carmack cs. Methods Mol Biol. 2016;1490:73-82. doi: 10.1007/978-1-4939-6433-8_6. Methods Mol Biol. 2016. PMID: 27665594 Free PMC article.

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