Workman C - Search Results

1

Enrichment of regulatory signals in conserved non-coding genomic sequence.

Levy S, Hannenhalli S, Workman C. Levy S, et al. Among authors: workman c. Bioinformatics. 2001 Oct;17(10):871-7. doi: 10.1093/bioinformatics/17.10.871. Bioinformatics. 2001. PMID: 11673231

2

DASS: efficient discovery and p-value calculation of substructures in unordered data.

Hollunder J, Friedel M, Beyer A, Workman CT, Wilhelm T. Hollunder J, et al. Bioinformatics. 2007 Jan 1;23(1):77-83. doi: 10.1093/bioinformatics/btl511. Epub 2006 Oct 10. Bioinformatics. 2007. PMID: 17032678

3

Predicting functionality of protein-DNA interactions by integrating diverse evidence.

Ucar D, Beyer A, Parthasarathy S, Workman CT. Ucar D, et al. Bioinformatics. 2009 Jun 15;25(12):i137-44. doi: 10.1093/bioinformatics/btp213. Bioinformatics. 2009. PMID: 19477979 Free PMC article.

4

Modeling regulatory networks with weight matrices.

Weaver DC, Workman CT, Stormo GD. Weaver DC, et al. Among authors: workman ct. Pac Symp Biocomput. 1999:112-23. doi: 10.1142/9789814447300_0011. Pac Symp Biocomput. 1999. PMID: 10380190 Free article.

5

Neural network predicts sequence of TP53 gene based on DNA chip.

Spicker JS, Wikman F, Lu ML, Cordon-Cardo C, Workman C, ØRntoft TF, Brunak S, Knudsen S. Spicker JS, et al. Among authors: workman c. Bioinformatics. 2002 Aug;18(8):1133-4. doi: 10.1093/bioinformatics/18.8.1133. Bioinformatics. 2002. PMID: 12176837

6

enoLOGOS: a versatile web tool for energy normalized sequence logos.

Workman CT, Yin Y, Corcoran DL, Ideker T, Stormo GD, Benos PV. Workman CT, et al. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W389-92. doi: 10.1093/nar/gki439. Nucleic Acids Res. 2005. PMID: 15980495 Free PMC article.

7

The identification and functional annotation of RNA structures conserved in vertebrates.

Seemann SE, Mirza AH, Hansen C, Bang-Berthelsen CH, Garde C, Christensen-Dalsgaard M, Torarinsson E, Yao Z, Workman CT, Pociot F, Nielsen H, Tommerup N, Ruzzo WL, Gorodkin J. Seemann SE, et al. Among authors: workman ct. Genome Res. 2017 Aug;27(8):1371-1383. doi: 10.1101/gr.208652.116. Epub 2017 May 9. Genome Res. 2017. PMID: 28487280 Free PMC article.

8

ANN-Spec: a method for discovering transcription factor binding sites with improved specificity.

Workman CT, Stormo GD. Workman CT, et al. Pac Symp Biocomput. 2000:467-78. doi: 10.1142/9789814447331_0044. Pac Symp Biocomput. 2000. PMID: 10902194 Free article.

9

Natural genetic variation impacts expression levels of coding, non-coding, and antisense transcripts in fission yeast.

Clément-Ziza M, Marsellach FX, Codlin S, Papadakis MA, Reinhardt S, Rodríguez-López M, Martin S, Marguerat S, Schmidt A, Lee E, Workman CT, Bähler J, Beyer A. Clément-Ziza M, et al. Mol Syst Biol. 2014 Nov 28;10(11):764. doi: 10.15252/msb.20145123. Mol Syst Biol. 2014. PMID: 25432776 Free PMC article.

10

Integrated assessment and prediction of transcription factor binding.

Beyer A, Workman C, Hollunder J, Radke D, Möller U, Wilhelm T, Ideker T. Beyer A, et al. Among authors: workman c. PLoS Comput Biol. 2006 Jun 16;2(6):e70. doi: 10.1371/journal.pcbi.0020070. Epub 2006 Jun 16. PLoS Comput Biol. 2006. PMID: 16789814 Free PMC article.

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