Vajda S - Search Results

1

Semiglobal simplex optimization and its application to determining the preferred solvation sites of proteins.

Dennis S, Vajda S. Dennis S, et al. Among authors: vajda s. J Comput Chem. 2002 Feb;23(3):319-34. doi: 10.1002/jcc.10026. J Comput Chem. 2002. PMID: 11908495

2

Continuum electrostatic analysis of preferred solvation sites around proteins in solution.

Dennis S, Camacho CJ, Vajda S. Dennis S, et al. Among authors: vajda s. Proteins. 2000 Feb 1;38(2):176-88. Proteins. 2000. PMID: 10656264

3

Discrimination of near-native protein structures from misfolded models by empirical free energy functions.

Gatchell DW, Dennis S, Vajda S. Gatchell DW, et al. Among authors: vajda s. Proteins. 2000 Dec 1;41(4):518-34. Proteins. 2000. PMID: 11056039

4

Computational mapping identifies the binding sites of organic solvents on proteins.

Dennis S, Kortvelyesi T, Vajda S. Dennis S, et al. Among authors: vajda s. Proc Natl Acad Sci U S A. 2002 Apr 2;99(7):4290-5. doi: 10.1073/pnas.062398499. Epub 2002 Mar 19. Proc Natl Acad Sci U S A. 2002. PMID: 11904374 Free PMC article.

5

Algorithms for computational solvent mapping of proteins.

Kortvelyesi T, Dennis S, Silberstein M, Brown L 3rd, Vajda S. Kortvelyesi T, et al. Among authors: vajda s. Proteins. 2003 May 15;51(3):340-51. doi: 10.1002/prot.10287. Proteins. 2003. PMID: 12696046

6

Improved mapping of protein binding sites.

Kortvelyesi T, Silberstein M, Dennis S, Vajda S. Kortvelyesi T, et al. Among authors: vajda s. J Comput Aided Mol Des. 2003 Feb-Apr;17(2-4):173-86. doi: 10.1023/a:1025369923311. J Comput Aided Mol Des. 2003. PMID: 13677484

7

Identification of substrate binding sites in enzymes by computational solvent mapping.

Silberstein M, Dennis S, Brown L, Kortvelyesi T, Clodfelter K, Vajda S. Silberstein M, et al. Among authors: vajda s. J Mol Biol. 2003 Oct 3;332(5):1095-113. doi: 10.1016/j.jmb.2003.08.019. J Mol Biol. 2003. PMID: 14499612

8

Identification of hot spots within druggable binding regions by computational solvent mapping of proteins.

Landon MR, Lancia DR Jr, Yu J, Thiel SC, Vajda S. Landon MR, et al. Among authors: vajda s. J Med Chem. 2007 Mar 22;50(6):1231-40. doi: 10.1021/jm061134b. Epub 2007 Feb 17. J Med Chem. 2007. PMID: 17305325

9

Protein docking by the underestimation of free energy funnels in the space of encounter complexes.

Shen Y, Paschalidis ICh, Vakili P, Vajda S. Shen Y, et al. Among authors: vajda s. PLoS Comput Biol. 2008 Oct;4(10):e1000191. doi: 10.1371/journal.pcbi.1000191. Epub 2008 Oct 10. PLoS Comput Biol. 2008. PMID: 18846200 Free PMC article.

10

Analysis of protein binding sites by computational solvent mapping.

Hall DR, Kozakov D, Vajda S. Hall DR, et al. Among authors: vajda s. Methods Mol Biol. 2012;819:13-27. doi: 10.1007/978-1-61779-465-0_2. Methods Mol Biol. 2012. PMID: 22183527 Free PMC article.

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