Debe D - Search Results

1

Structure-based design of mutant Methanococcus jannaschii tyrosyl-tRNA synthetase for incorporation of O-methyl-L-tyrosine.

Zhang D, Vaidehi N, Goddard WA 3rd, Danzer JF, Debe D. Zhang D, et al. Among authors: debe d. Proc Natl Acad Sci U S A. 2002 May 14;99(10):6579-84. doi: 10.1073/pnas.052150499. Proc Natl Acad Sci U S A. 2002. PMID: 12011422 Free PMC article.

2

The topomer-sampling model of protein folding.

Debe DA, Carlson MJ, Goddard WA 3rd. Debe DA, et al. Proc Natl Acad Sci U S A. 1999 Mar 16;96(6):2596-601. doi: 10.1073/pnas.96.6.2596. Proc Natl Acad Sci U S A. 1999. PMID: 10077555 Free PMC article.

3

First principles prediction of protein folding rates.

Debe DA, Goddard WA 3rd. Debe DA, et al. J Mol Biol. 1999 Dec 3;294(3):619-25. doi: 10.1006/jmbi.1999.3278. J Mol Biol. 1999. PMID: 10610784 Review.

4

STRUCTFAST: protein sequence remote homology detection and alignment using novel dynamic programming and profile-profile scoring.

Debe DA, Danzer JF, Goddard WA, Poleksic A. Debe DA, et al. Proteins. 2006 Sep 1;64(4):960-7. doi: 10.1002/prot.21049. Proteins. 2006. PMID: 16786595

5

StructSorter: a method for continuously updating a comprehensive protein structure alignment database.

Palmer B, Danzer JF, Hambly K, Debe DA. Palmer B, et al. Among authors: debe da. J Chem Inf Model. 2006 Jul-Aug;46(4):1871-6. doi: 10.1021/ci0601012. J Chem Inf Model. 2006. PMID: 16859318 Free article.

6

SPINFAST: using structure alignment profiles to enhance the accuracy and assess the reliability of protein side-chain modeling.

Poleksic A, Danzer JF, Palmer BA, Olafson BD, Debe DA. Poleksic A, et al. Among authors: debe da. Proteins. 2006 Dec 1;65(4):953-8. doi: 10.1002/prot.21154. Proteins. 2006. PMID: 17006949

7

A different look at the quality of modeled three-dimensional protein structures.

Poleksic A, Fienup M, Danzer JF, Debe DA. Poleksic A, et al. Among authors: debe da. J Bioinform Comput Biol. 2008 Apr;6(2):335-45. doi: 10.1142/s0219720008003424. J Bioinform Comput Biol. 2008. PMID: 18464326

8

Convergent Island Statistics: a fast method for determining local alignment score significance.

Poleksic A, Danzer JF, Hambly K, Debe DA. Poleksic A, et al. Among authors: debe da. Bioinformatics. 2005 Jun 15;21(12):2827-31. doi: 10.1093/bioinformatics/bti433. Epub 2005 Apr 7. Bioinformatics. 2005. PMID: 15817690

9

Interrogating the druggable genome with structural informatics.

Hambly K, Danzer J, Muskal S, Debe DA. Hambly K, et al. Among authors: debe da. Mol Divers. 2006 Aug;10(3):273-81. doi: 10.1007/s11030-006-9035-3. Epub 2006 Sep 22. Mol Divers. 2006. PMID: 17031532

10

Kinetic role of electrostatic interactions in the unfolding of hyperthermophilic and mesophilic rubredoxins.

Cavagnero S, Debe DA, Zhou ZH, Adams MW, Chan SI. Cavagnero S, et al. Among authors: debe da. Biochemistry. 1998 Mar 10;37(10):3369-76. doi: 10.1021/bi9721795. Biochemistry. 1998. PMID: 9521657

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