Deupi X - Search Results

1

Influence of the environment in the conformation of alpha-helices studied by protein database search and molecular dynamics simulations.

Olivella M, Deupi X, Govaerts C, Pardo L. Olivella M, et al. Among authors: deupi x. Biophys J. 2002 Jun;82(6):3207-13. doi: 10.1016/S0006-3495(02)75663-4. Biophys J. 2002. PMID: 12023245 Free PMC article.

2

Ser and Thr residues modulate the conformation of pro-kinked transmembrane alpha-helices.

Deupi X, Olivella M, Govaerts C, Ballesteros JA, Campillo M, Pardo L. Deupi X, et al. Biophys J. 2004 Jan;86(1 Pt 1):105-15. doi: 10.1016/S0006-3495(04)74088-6. Biophys J. 2004. PMID: 14695254 Free PMC article.

3

Influence of the g- conformation of Ser and Thr on the structure of transmembrane helices.

Deupi X, Olivella M, Sanz A, Dölker N, Campillo M, Pardo L. Deupi X, et al. J Struct Biol. 2010 Jan;169(1):116-23. doi: 10.1016/j.jsb.2009.09.009. Epub 2009 Sep 17. J Struct Biol. 2010. PMID: 19766191

4

Serine and threonine residues bend alpha-helices in the chi(1) = g(-) conformation.

Ballesteros JA, Deupi X, Olivella M, Haaksma EE, Pardo L. Ballesteros JA, et al. Among authors: deupi x. Biophys J. 2000 Nov;79(5):2754-60. doi: 10.1016/S0006-3495(00)76514-3. Biophys J. 2000. PMID: 11053148 Free PMC article.

5

Relation between sequence and structure in membrane proteins.

Olivella M, Gonzalez A, Pardo L, Deupi X. Olivella M, et al. Among authors: deupi x. Bioinformatics. 2013 Jul 1;29(13):1589-92. doi: 10.1093/bioinformatics/btt249. Epub 2013 May 14. Bioinformatics. 2013. PMID: 23677941

6

TMalphaDB and TMbetaDB: web servers to study the structural role of sequence motifs in α-helix and β-barrel domains of membrane proteins.

Perea M, Lugtenburg I, Mayol E, Cordomí A, Deupí X, Pardo L, Olivella M. Perea M, et al. Among authors: deupi x. BMC Bioinformatics. 2015 Aug 20;16(1):266. doi: 10.1186/s12859-015-0699-5. BMC Bioinformatics. 2015. PMID: 26289158 Free PMC article.

7

The role of internal water molecules in the structure and function of the rhodopsin family of G protein-coupled receptors.

Pardo L, Deupi X, Dölker N, López-Rodríguez ML, Campillo M. Pardo L, et al. Among authors: deupi x. Chembiochem. 2007 Jan 2;8(1):19-24. doi: 10.1002/cbic.200600429. Chembiochem. 2007. PMID: 17173267 Review. No abstract available.

8

Molecular basis of ligand dissociation in β-adrenergic receptors.

González A, Perez-Acle T, Pardo L, Deupi X. González A, et al. Among authors: deupi x. PLoS One. 2011;6(9):e23815. doi: 10.1371/journal.pone.0023815. Epub 2011 Sep 7. PLoS One. 2011. PMID: 21915263 Free PMC article.

9

Design, synthesis and pharmacological evaluation of 5-hydroxytryptamine(1a) receptor ligands to explore the three-dimensional structure of the receptor.

López-Rodríguez ML, Vicente B, Deupi X, Barrondo S, Olivella M, Morcillo MJ, Behamú B, Ballesteros JA, Sallés J, Pardo L. López-Rodríguez ML, et al. Among authors: deupi x. Mol Pharmacol. 2002 Jul;62(1):15-21. doi: 10.1124/mol.62.1.15. Mol Pharmacol. 2002. PMID: 12065750

10

Activation of CCR5 by chemokines involves an aromatic cluster between transmembrane helices 2 and 3.

Govaerts C, Bondue A, Springael JY, Olivella M, Deupi X, Le Poul E, Wodak SJ, Parmentier M, Pardo L, Blanpain C. Govaerts C, et al. Among authors: deupi x. J Biol Chem. 2003 Jan 17;278(3):1892-903. doi: 10.1074/jbc.M205685200. Epub 2002 Oct 30. J Biol Chem. 2003. PMID: 12411445 Free article.

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