Arkin AP - Search Results

1

Alm E, Arkin AP. Alm E, et al. Among authors: arkin ap. Curr Opin Struct Biol. 2003 Apr;13(2):193-202. doi: 10.1016/s0959-440x(03)00031-9. Curr Opin Struct Biol. 2003. PMID: 12727512 Review.

2

Control motifs for intracellular regulatory networks.

Rao CV, Arkin AP. Rao CV, et al. Among authors: arkin ap. Annu Rev Biomed Eng. 2001;3:391-419. doi: 10.1146/annurev.bioeng.3.1.391. Annu Rev Biomed Eng. 2001. PMID: 11447069 Review.

3

Determination of causal connectivities of species in reaction networks.

Vance W, Arkin A, Ross J. Vance W, et al. Proc Natl Acad Sci U S A. 2002 Apr 30;99(9):5816-21. doi: 10.1073/pnas.022049699. Proc Natl Acad Sci U S A. 2002. PMID: 11983885 Free PMC article.

4

Motifs, modules and games in bacteria.

Wolf DM, Arkin AP. Wolf DM, et al. Among authors: arkin ap. Curr Opin Microbiol. 2003 Apr;6(2):125-34. doi: 10.1016/s1369-5274(03)00033-x. Curr Opin Microbiol. 2003. PMID: 12732301 Review.

5

Global transcriptome analysis of the heat shock response of Shewanella oneidensis.

Gao H, Wang Y, Liu X, Yan T, Wu L, Alm E, Arkin A, Thompson DK, Zhou J. Gao H, et al. J Bacteriol. 2004 Nov;186(22):7796-803. doi: 10.1128/JB.186.22.7796-7803.2004. J Bacteriol. 2004. PMID: 15516594 Free PMC article.

6

Reconstruction of regulatory and metabolic pathways in metal-reducing delta-proteobacteria.

Rodionov DA, Dubchak I, Arkin A, Alm E, Gelfand MS. Rodionov DA, et al. Genome Biol. 2004;5(11):R90. doi: 10.1186/gb-2004-5-11-r90. Epub 2004 Oct 22. Genome Biol. 2004. PMID: 15535866 Free PMC article.

7

A novel method for accurate operon predictions in all sequenced prokaryotes.

Price MN, Huang KH, Alm EJ, Arkin AP. Price MN, et al. Among authors: arkin ap. Nucleic Acids Res. 2005 Feb 8;33(3):880-92. doi: 10.1093/nar/gki232. Print 2005. Nucleic Acids Res. 2005. PMID: 15701760 Free PMC article.

8

Transcriptome analysis of Shewanella oneidensis MR-1 in response to elevated salt conditions.

Liu Y, Gao W, Wang Y, Wu L, Liu X, Yan T, Alm E, Arkin A, Thompson DK, Fields MW, Zhou J. Liu Y, et al. J Bacteriol. 2005 Apr;187(7):2501-7. doi: 10.1128/JB.187.7.2501-2507.2005. J Bacteriol. 2005. PMID: 15774893 Free PMC article.

9

Operon formation is driven by co-regulation and not by horizontal gene transfer.

Price MN, Huang KH, Arkin AP, Alm EJ. Price MN, et al. Among authors: arkin ap. Genome Res. 2005 Jun;15(6):809-19. doi: 10.1101/gr.3368805. Genome Res. 2005. PMID: 15930492 Free PMC article.

10

Interruptions in gene expression drive highly expressed operons to the leading strand of DNA replication.

Price MN, Alm EJ, Arkin AP. Price MN, et al. Among authors: arkin ap. Nucleic Acids Res. 2005 Jun 7;33(10):3224-34. doi: 10.1093/nar/gki638. Print 2005. Nucleic Acids Res. 2005. PMID: 15942025 Free PMC article.

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