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AraCyc: a biochemical pathway database for Arabidopsis.
Mueller LA, Zhang P, Rhee SY. Mueller LA, et al. Among authors: zhang p. Plant Physiol. 2003 Jun;132(2):453-60. doi: 10.1104/pp.102.017236. Plant Physiol. 2003. PMID: 12805578 Free PMC article.
TAIR: a resource for integrated Arabidopsis data.
Garcia-Hernandez M, Berardini TZ, Chen G, Crist D, Doyle A, Huala E, Knee E, Lambrecht M, Miller N, Mueller LA, Mundodi S, Reiser L, Rhee SY, Scholl R, Tacklind J, Weems DC, Wu Y, Xu I, Yoo D, Yoon J, Zhang P. Garcia-Hernandez M, et al. Among authors: zhang p. Funct Integr Genomics. 2002 Nov;2(6):239-53. doi: 10.1007/s10142-002-0077-z. Epub 2002 Oct 3. Funct Integr Genomics. 2002. PMID: 12444417 Review.
The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community.
Rhee SY, Beavis W, Berardini TZ, Chen G, Dixon D, Doyle A, Garcia-Hernandez M, Huala E, Lander G, Montoya M, Miller N, Mueller LA, Mundodi S, Reiser L, Tacklind J, Weems DC, Wu Y, Xu I, Yoo D, Yoon J, Zhang P. Rhee SY, et al. Among authors: zhang p. Nucleic Acids Res. 2003 Jan 1;31(1):224-8. doi: 10.1093/nar/gkg076. Nucleic Acids Res. 2003. PMID: 12519987 Free PMC article.
Functional annotation of the Arabidopsis genome using controlled vocabularies.
Berardini TZ, Mundodi S, Reiser L, Huala E, Garcia-Hernandez M, Zhang P, Mueller LA, Yoon J, Doyle A, Lander G, Moseyko N, Yoo D, Xu I, Zoeckler B, Montoya M, Miller N, Weems D, Rhee SY. Berardini TZ, et al. Among authors: zhang p. Plant Physiol. 2004 Jun;135(2):745-55. doi: 10.1104/pp.104.040071. Epub 2004 Jun 1. Plant Physiol. 2004. PMID: 15173566 Free PMC article.
MetaCyc: a multiorganism database of metabolic pathways and enzymes.
Krieger CJ, Zhang P, Mueller LA, Wang A, Paley S, Arnaud M, Pick J, Rhee SY, Karp PD. Krieger CJ, et al. Among authors: zhang p. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D438-42. doi: 10.1093/nar/gkh100. Nucleic Acids Res. 2004. PMID: 14681452 Free PMC article.
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.
Caspi R, Altman T, Billington R, Dreher K, Foerster H, Fulcher CA, Holland TA, Keseler IM, Kothari A, Kubo A, Krummenacker M, Latendresse M, Mueller LA, Ong Q, Paley S, Subhraveti P, Weaver DS, Weerasinghe D, Zhang P, Karp PD. Caspi R, et al. Among authors: zhang p. Nucleic Acids Res. 2014 Jan;42(Database issue):D459-71. doi: 10.1093/nar/gkt1103. Epub 2013 Nov 12. Nucleic Acids Res. 2014. PMID: 24225315 Free PMC article.
iTAK: A Program for Genome-wide Prediction and Classification of Plant Transcription Factors, Transcriptional Regulators, and Protein Kinases.
Zheng Y, Jiao C, Sun H, Rosli HG, Pombo MA, Zhang P, Banf M, Dai X, Martin GB, Giovannoni JJ, Zhao PX, Rhee SY, Fei Z. Zheng Y, et al. Among authors: zhang p. Mol Plant. 2016 Dec 5;9(12):1667-1670. doi: 10.1016/j.molp.2016.09.014. Epub 2016 Oct 5. Mol Plant. 2016. PMID: 27717919 Free article. No abstract available.
Genome-Wide Prediction of Metabolic Enzymes, Pathways, and Gene Clusters in Plants.
Schläpfer P, Zhang P, Wang C, Kim T, Banf M, Chae L, Dreher K, Chavali AK, Nilo-Poyanco R, Bernard T, Kahn D, Rhee SY. Schläpfer P, et al. Among authors: zhang p. Plant Physiol. 2017 Apr;173(4):2041-2059. doi: 10.1104/pp.16.01942. Epub 2017 Feb 22. Plant Physiol. 2017. PMID: 28228535 Free PMC article.
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