Lee Y - Search Results

1

Enrichment of gene-coding sequences in maize by genome filtration.

Whitelaw CA, Barbazuk WB, Pertea G, Chan AP, Cheung F, Lee Y, Zheng L, van Heeringen S, Karamycheva S, Bennetzen JL, SanMiguel P, Lakey N, Bedell J, Yuan Y, Budiman MA, Resnick A, Van Aken S, Utterback T, Riedmuller S, Williams M, Feldblyum T, Schubert K, Beachy R, Fraser CM, Quackenbush J. Whitelaw CA, et al. Among authors: lee y. Science. 2003 Dec 19;302(5653):2118-20. doi: 10.1126/science.1090047. Science. 2003. PMID: 14684821

2

The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes.

Lee Y, Tsai J, Sunkara S, Karamycheva S, Pertea G, Sultana R, Antonescu V, Chan A, Cheung F, Quackenbush J. Lee Y, et al. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D71-4. doi: 10.1093/nar/gki064. Nucleic Acids Res. 2005. PMID: 15608288 Free PMC article.

3

RESOURCERER: a database for annotating and linking microarray resources within and across species.

Tsai J, Sultana R, Lee Y, Pertea G, Karamycheva S, Antonescu V, Cho J, Parvizi B, Cheung F, Quackenbush J. Tsai J, et al. Among authors: lee y. Genome Biol. 2001;2(11):SOFTWARE0002. doi: 10.1186/gb-2001-2-11-software0002. Genome Biol. 2001. PMID: 16173164 Free PMC article.

4

Cross-referencing eukaryotic genomes: TIGR Orthologous Gene Alignments (TOGA).

Lee Y, Sultana R, Pertea G, Cho J, Karamycheva S, Tsai J, Parvizi B, Cheung F, Antonescu V, White J, Holt I, Liang F, Quackenbush J. Lee Y, et al. Genome Res. 2002 Mar;12(3):493-502. doi: 10.1101/gr.212002. Genome Res. 2002. PMID: 11875039 Free PMC article.

5

TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets.

Pertea G, Huang X, Liang F, Antonescu V, Sultana R, Karamycheva S, Lee Y, White J, Cheung F, Parvizi B, Tsai J, Quackenbush J. Pertea G, et al. Among authors: lee y. Bioinformatics. 2003 Mar 22;19(5):651-2. doi: 10.1093/bioinformatics/btg034. Bioinformatics. 2003. PMID: 12651724

6

Using the TIGR gene index databases for biological discovery.

Lee Y, Quackenbush J. Lee Y, et al. Curr Protoc Bioinformatics. 2003 Nov;Chapter 1:Unit 1.6. doi: 10.1002/0471250953.bi0106s03. Curr Protoc Bioinformatics. 2003. PMID: 18428690

7

Comparative analyses of potato expressed sequence tag libraries.

Ronning CM, Stegalkina SS, Ascenzi RA, Bougri O, Hart AL, Utterbach TR, Vanaken SE, Riedmuller SB, White JA, Cho J, Pertea GM, Lee Y, Karamycheva S, Sultana R, Tsai J, Quackenbush J, Griffiths HM, Restrepo S, Smart CD, Fry WE, Van Der Hoeven R, Tanksley S, Zhang P, Jin H, Yamamoto ML, Baker BJ, Buell CR. Ronning CM, et al. Among authors: lee y. Plant Physiol. 2003 Feb;131(2):419-29. doi: 10.1104/pp.013581. Plant Physiol. 2003. PMID: 12586867 Free PMC article.

8

Sequence analysis of a rainbow trout cDNA library and creation of a gene index.

Rexroad CE 3rd, Lee Y, Keele JW, Karamycheva S, Brown G, Koop B, Gahr SA, Palti Y, Quackenbush J. Rexroad CE 3rd, et al. Among authors: lee y. Cytogenet Genome Res. 2003;102(1-4):347-54. doi: 10.1159/000075773. Cytogenet Genome Res. 2003. PMID: 14970727

9

Comparative analysis of 87,000 expressed sequence tags from the fumonisin-producing fungus Fusarium verticillioides.

Brown DW, Cheung F, Proctor RH, Butchko RA, Zheng L, Lee Y, Utterback T, Smith S, Feldblyum T, Glenn AE, Plattner RD, Kendra DF, Town CD, Whitelaw CA. Brown DW, et al. Among authors: lee y. Fungal Genet Biol. 2005 Oct;42(10):848-61. doi: 10.1016/j.fgb.2005.06.001. Fungal Genet Biol. 2005. PMID: 16099185

10

The TIGR Rice Genome Annotation Resource: improvements and new features.

Ouyang S, Zhu W, Hamilton J, Lin H, Campbell M, Childs K, Thibaud-Nissen F, Malek RL, Lee Y, Zheng L, Orvis J, Haas B, Wortman J, Buell CR. Ouyang S, et al. Among authors: lee y. Nucleic Acids Res. 2007 Jan;35(Database issue):D883-7. doi: 10.1093/nar/gkl976. Epub 2006 Dec 1. Nucleic Acids Res. 2007. PMID: 17145706 Free PMC article.

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