Eisen MB - Search Results

1

Benchmarking tools for the alignment of functional noncoding DNA.

Pollard DA, Bergman CM, Stoye J, Celniker SE, Eisen MB. Pollard DA, et al. Among authors: eisen mb. BMC Bioinformatics. 2004 Jan 21;5:6. doi: 10.1186/1471-2105-5-6. BMC Bioinformatics. 2004. PMID: 14736341 Free PMC article.

2

Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome.

Berman BP, Nibu Y, Pfeiffer BD, Tomancak P, Celniker SE, Levine M, Rubin GM, Eisen MB. Berman BP, et al. Among authors: eisen mb. Proc Natl Acad Sci U S A. 2002 Jan 22;99(2):757-62. doi: 10.1073/pnas.231608898. Proc Natl Acad Sci U S A. 2002. PMID: 11805330 Free PMC article.

3

Correction: Benchmarking tools for the alignment of functional noncoding DNA.

Pollard DA, Bergman CM, Stoye J, Celniker SE, Eisen MB. Pollard DA, et al. Among authors: eisen mb. BMC Bioinformatics. 2004 Jun 8;5:73. doi: 10.1186/1471-2105-5-73. BMC Bioinformatics. 2004. PMID: 15186509 Free PMC article. No abstract available.

4

Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura.

Berman BP, Pfeiffer BD, Laverty TR, Salzberg SL, Rubin GM, Eisen MB, Celniker SE. Berman BP, et al. Among authors: eisen mb. Genome Biol. 2004;5(9):R61. doi: 10.1186/gb-2004-5-9-r61. Epub 2004 Aug 20. Genome Biol. 2004. PMID: 15345045 Free PMC article.

5

MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model.

Moses AM, Chiang DY, Pollard DA, Iyer VN, Eisen MB. Moses AM, et al. Among authors: eisen mb. Genome Biol. 2004;5(12):R98. doi: 10.1186/gb-2004-5-12-r98. Epub 2004 Nov 30. Genome Biol. 2004. PMID: 15575972 Free PMC article.

6

GATA: a graphic alignment tool for comparative sequence analysis.

Nix DA, Eisen MB. Nix DA, et al. Among authors: eisen mb. BMC Bioinformatics. 2005 Jan 17;6:9. doi: 10.1186/1471-2105-6-9. BMC Bioinformatics. 2005. PMID: 15655071 Free PMC article.

7

Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments.

Pollard DA, Moses AM, Iyer VN, Eisen MB. Pollard DA, et al. Among authors: eisen mb. BMC Bioinformatics. 2006 Aug 14;7:376. doi: 10.1186/1471-2105-7-376. BMC Bioinformatics. 2006. PMID: 16904011 Free PMC article.

8

Design of a combinatorial DNA microarray for protein-DNA interaction studies.

Mintseris J, Eisen MB. Mintseris J, et al. Among authors: eisen mb. BMC Bioinformatics. 2006 Oct 3;7:429. doi: 10.1186/1471-2105-7-429. BMC Bioinformatics. 2006. PMID: 17018151 Free PMC article.

9

Large-scale turnover of functional transcription factor binding sites in Drosophila.

Moses AM, Pollard DA, Nix DA, Iyer VN, Li XY, Biggin MD, Eisen MB. Moses AM, et al. Among authors: eisen mb. PLoS Comput Biol. 2006 Oct;2(10):e130. doi: 10.1371/journal.pcbi.0020130. Epub 2006 Aug 21. PLoS Comput Biol. 2006. PMID: 17040121 Free PMC article.

10

Widespread discordance of gene trees with species tree in Drosophila: evidence for incomplete lineage sorting.

Pollard DA, Iyer VN, Moses AM, Eisen MB. Pollard DA, et al. Among authors: eisen mb. PLoS Genet. 2006 Oct 27;2(10):e173. doi: 10.1371/journal.pgen.0020173. Epub 2006 Aug 28. PLoS Genet. 2006. PMID: 17132051 Free PMC article.

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