Cetin-Atalay R - Search Results

1

An ontology for collaborative construction and analysis of cellular pathways.

Demir E, Babur O, Dogrusoz U, Gursoy A, Ayaz A, Gulesir G, Nisanci G, Cetin-Atalay R. Demir E, et al. Bioinformatics. 2004 Feb 12;20(3):349-56. doi: 10.1093/bioinformatics/btg416. Bioinformatics. 2004. PMID: 14960461

2

PATIKA: an integrated visual environment for collaborative construction and analysis of cellular pathways.

Demir E, Babur O, Dogrusoz U, Gursoy A, Nisanci G, Cetin-Atalay R, Ozturk M. Demir E, et al. Bioinformatics. 2002 Jul;18(7):996-1003. doi: 10.1093/bioinformatics/18.7.996. Bioinformatics. 2002. PMID: 12117798

3

iBioProVis: interactive visualization and analysis of compound bioactivity space.

Donmez A, Rifaioglu AS, Acar A, Doğan T, Cetin-Atalay R, Atalay V. Donmez A, et al. Bioinformatics. 2020 Aug 15;36(14):4227-4230. doi: 10.1093/bioinformatics/btaa496. Bioinformatics. 2020. PMID: 32407491 Free PMC article.

4

MDeePred: novel multi-channel protein featurization for deep learning-based binding affinity prediction in drug discovery.

Rifaioglu AS, Cetin Atalay R, Cansen Kahraman D, Doğan T, Martin M, Atalay V. Rifaioglu AS, et al. Bioinformatics. 2021 May 5;37(5):693-704. doi: 10.1093/bioinformatics/btaa858. Bioinformatics. 2021. PMID: 33067636

5

SLPred: a multi-view subcellular localization prediction tool for multi-location human proteins.

Özsarı G, Rifaioglu AS, Atakan A, Doğan T, Martin MJ, Çetin Atalay R, Atalay V. Özsarı G, et al. Bioinformatics. 2022 Sep 2;38(17):4226-4229. doi: 10.1093/bioinformatics/btac458. Bioinformatics. 2022. PMID: 35801913

6

Implicit motif distribution based hybrid computational kernel for sequence classification.

Atalay V, Cetin-Atalay R. Atalay V, et al. Bioinformatics. 2005 Apr 15;21(8):1429-36. doi: 10.1093/bioinformatics/bti212. Epub 2004 Dec 14. Bioinformatics. 2005. PMID: 15598837

7

EClerize: A customized force-directed graph drawing algorithm for biological graphs with EC attributes.

Danaci HF, Cetin-Atalay R, Atalay V. Danaci HF, et al. J Bioinform Comput Biol. 2018 Aug;16(4):1850007. doi: 10.1142/S0219720018500075. Epub 2018 Mar 26. J Bioinform Comput Biol. 2018. PMID: 29783871

8

Recent applications of deep learning and machine intelligence on in silico drug discovery: methods, tools and databases.

Rifaioglu AS, Atas H, Martin MJ, Cetin-Atalay R, Atalay V, Doğan T. Rifaioglu AS, et al. Brief Bioinform. 2019 Sep 27;20(5):1878-1912. doi: 10.1093/bib/bby061. Brief Bioinform. 2019. PMID: 30084866 Free PMC article. Review.

9

ECPred: a tool for the prediction of the enzymatic functions of protein sequences based on the EC nomenclature.

Dalkiran A, Rifaioglu AS, Martin MJ, Cetin-Atalay R, Atalay V, Doğan T. Dalkiran A, et al. BMC Bioinformatics. 2018 Sep 21;19(1):334. doi: 10.1186/s12859-018-2368-y. BMC Bioinformatics. 2018. PMID: 30241466 Free PMC article.

10

Identification of relative protein bands in polyacrylamide gel electrophoresis (PAGE) using a multi-resolution snake algorithm.

Gürcan MN, Koyutürk M, Yildiz HS, Cetin-Atalay R, Cetin AE. Gürcan MN, et al. Biotechniques. 1999 Jun;26(6):1162-6, 1168-9. doi: 10.2144/99266bc01. Biotechniques. 1999. PMID: 10376155 Free article.

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