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Database development in toxicogenomics: issues and efforts.
Mattes WB, Pettit SD, Sansone SA, Bushel PR, Waters MD. Mattes WB, et al. Among authors: waters md. Environ Health Perspect. 2004 Mar;112(4):495-505. doi: 10.1289/ehp.6697. Environ Health Perspect. 2004. PMID: 15033600 Free PMC article. Review.
Chemical effects in biological systems--data dictionary (CEBS-DD): a compendium of terms for the capture and integration of biological study design description, conventional phenotypes, and 'omics data.
Fostel J, Choi D, Zwickl C, Morrison N, Rashid A, Hasan A, Bao W, Richard A, Tong W, Bushel PR, Brown R, Bruno M, Cunningham ML, Dix D, Eastin W, Frade C, Garcia A, Heinloth A, Irwin R, Madenspacher J, Merrick BA, Papoian T, Paules R, Rocca-Serra P, Sansone AS, Stevens J, Tomer K, Yang C, Waters M. Fostel J, et al. Toxicol Sci. 2005 Dec;88(2):585-601. doi: 10.1093/toxsci/kfi315. Epub 2005 Sep 8. Toxicol Sci. 2005. PMID: 16150882
CEBS--Chemical Effects in Biological Systems: a public data repository integrating study design and toxicity data with microarray and proteomics data.
Waters M, Stasiewicz S, Merrick BA, Tomer K, Bushel P, Paules R, Stegman N, Nehls G, Yost KJ, Johnson CH, Gustafson SF, Xirasagar S, Xiao N, Huang CC, Boyer P, Chan DD, Pan Q, Gong H, Taylor J, Choi D, Rashid A, Ahmed A, Howle R, Selkirk J, Tennant R, Fostel J. Waters M, et al. Nucleic Acids Res. 2008 Jan;36(Database issue):D892-900. doi: 10.1093/nar/gkm755. Epub 2007 Oct 25. Nucleic Acids Res. 2008. PMID: 17962311 Free PMC article.
CEBS object model for systems biology data, SysBio-OM.
Xirasagar S, Gustafson S, Merrick BA, Tomer KB, Stasiewicz S, Chan DD, Yost KJ 3rd, Yates JR 3rd, Sumner S, Xiao N, Waters MD. Xirasagar S, et al. Among authors: waters md. Bioinformatics. 2004 Sep 1;20(13):2004-15. doi: 10.1093/bioinformatics/bth189. Epub 2004 Mar 25. Bioinformatics. 2004. PMID: 15044233
116 results