König R - Search Results

1

Applying Support Vector Machines for Gene Ontology based gene function prediction.

Vinayagam A, König R, Moormann J, Schubert F, Eils R, Glatting KH, Suhai S. Vinayagam A, et al. Among authors: konig r. BMC Bioinformatics. 2004 Aug 26;5:116. doi: 10.1186/1471-2105-5-116. BMC Bioinformatics. 2004. PMID: 15333146 Free PMC article.

2

GOPET: a tool for automated predictions of Gene Ontology terms.

Vinayagam A, del Val C, Schubert F, Eils R, Glatting KH, Suhai S, König R. Vinayagam A, et al. Among authors: konig r. BMC Bioinformatics. 2006 Mar 20;7:161. doi: 10.1186/1471-2105-7-161. BMC Bioinformatics. 2006. PMID: 16549020 Free PMC article.

3

Gene expression analysis on biochemical networks using the Potts spin model.

König R, Eils R. König R, et al. Bioinformatics. 2004 Jul 10;20(10):1500-5. doi: 10.1093/bioinformatics/bth109. Bioinformatics. 2004. PMID: 15231542

4

Global gene expression profiling and cluster analysis in Xenopus laevis.

Baldessari D, Shin Y, Krebs O, König R, Koide T, Vinayagam A, Fenger U, Mochii M, Terasaka C, Kitayama A, Peiffer D, Ueno N, Eils R, Cho KW, Niehrs C. Baldessari D, et al. Among authors: konig r. Mech Dev. 2005 Mar;122(3):441-75. doi: 10.1016/j.mod.2004.11.007. Mech Dev. 2005. PMID: 15763214 Free article.

5

Discovering functional gene expression patterns in the metabolic network of Escherichia coli with wavelets transforms.

König R, Schramm G, Oswald M, Seitz H, Sager S, Zapatka M, Reinelt G, Eils R. König R, et al. BMC Bioinformatics. 2006 Mar 8;7:119. doi: 10.1186/1471-2105-7-119. BMC Bioinformatics. 2006. PMID: 16524469 Free PMC article.

6

Using gene expression data and network topology to detect substantial pathways, clusters and switches during oxygen deprivation of Escherichia coli.

Schramm G, Zapatka M, Eils R, König R. Schramm G, et al. Among authors: konig r. BMC Bioinformatics. 2007 May 8;8:149. doi: 10.1186/1471-2105-8-149. BMC Bioinformatics. 2007. PMID: 17488495 Free PMC article.

7

Identifying essential genes in bacterial metabolic networks with machine learning methods.

Plaimas K, Eils R, König R. Plaimas K, et al. Among authors: konig r. BMC Syst Biol. 2010 May 3;4:56. doi: 10.1186/1752-0509-4-56. BMC Syst Biol. 2010. PMID: 20438628 Free PMC article.

8

RIP: the regulatory interaction predictor--a machine learning-based approach for predicting target genes of transcription factors.

Bauer T, Eils R, König R. Bauer T, et al. Among authors: konig r. Bioinformatics. 2011 Aug 15;27(16):2239-47. doi: 10.1093/bioinformatics/btr366. Epub 2011 Jun 20. Bioinformatics. 2011. PMID: 21690103

9

Disease-gene discovery by integration of 3D gene expression and transcription factor binding affinities.

Piro RM, Molineris I, Di Cunto F, Eils R, König R. Piro RM, et al. Among authors: konig r. Bioinformatics. 2013 Feb 15;29(4):468-75. doi: 10.1093/bioinformatics/bts720. Epub 2012 Dec 24. Bioinformatics. 2013. PMID: 23267172

10

SplicingCompass: differential splicing detection using RNA-seq data.

Aschoff M, Hotz-Wagenblatt A, Glatting KH, Fischer M, Eils R, König R. Aschoff M, et al. Among authors: konig r. Bioinformatics. 2013 May 1;29(9):1141-8. doi: 10.1093/bioinformatics/btt101. Epub 2013 Feb 28. Bioinformatics. 2013. PMID: 23449093

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