Zhang MQ - Search Results

1

Genome-wide prediction and analysis of function-specific transcription factor binding sites.

Long F, Liu H, Hahn C, Sumazin P, Zhang MQ, Zilberstein A. Long F, et al. Among authors: zhang mq. In Silico Biol. 2004;4(4):395-410. In Silico Biol. 2004. PMID: 15506990

2

Identifying tissue-selective transcription factor binding sites in vertebrate promoters.

Smith AD, Sumazin P, Zhang MQ. Smith AD, et al. Among authors: zhang mq. Proc Natl Acad Sci U S A. 2005 Feb 1;102(5):1560-5. doi: 10.1073/pnas.0406123102. Epub 2005 Jan 24. Proc Natl Acad Sci U S A. 2005. PMID: 15668401 Free PMC article.

3

Mining ChIP-chip data for transcription factor and cofactor binding sites.

Smith AD, Sumazin P, Das D, Zhang MQ. Smith AD, et al. Among authors: zhang mq. Bioinformatics. 2005 Jun;21 Suppl 1:i403-12. doi: 10.1093/bioinformatics/bti1043. Bioinformatics. 2005. PMID: 15961485

4

Tissue-specific regulatory elements in mammalian promoters.

Smith AD, Sumazin P, Zhang MQ. Smith AD, et al. Among authors: zhang mq. Mol Syst Biol. 2007;3:73. doi: 10.1038/msb4100114. Epub 2007 Jan 16. Mol Syst Biol. 2007. PMID: 17224917 Free PMC article.

5

Similarity of position frequency matrices for transcription factor binding sites.

Schones DE, Sumazin P, Zhang MQ. Schones DE, et al. Among authors: zhang mq. Bioinformatics. 2005 Feb 1;21(3):307-13. doi: 10.1093/bioinformatics/bth480. Epub 2004 Aug 19. Bioinformatics. 2005. PMID: 15319260

6

DNA motifs in human and mouse proximal promoters predict tissue-specific expression.

Smith AD, Sumazin P, Xuan Z, Zhang MQ. Smith AD, et al. Among authors: zhang mq. Proc Natl Acad Sci U S A. 2006 Apr 18;103(16):6275-80. doi: 10.1073/pnas.0508169103. Epub 2006 Apr 10. Proc Natl Acad Sci U S A. 2006. PMID: 16606849 Free PMC article.

7

DWE: discriminating word enumerator.

Sumazin P, Chen G, Hata N, Smith AD, Zhang T, Zhang MQ. Sumazin P, et al. Among authors: zhang mq, zhang t. Bioinformatics. 2005 Jan 1;21(1):31-8. doi: 10.1093/bioinformatics/bth471. Epub 2004 Aug 27. Bioinformatics. 2005. PMID: 15333453

8

Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins.

Liu HX, Zhang M, Krainer AR. Liu HX, et al. Genes Dev. 1998 Jul 1;12(13):1998-2012. doi: 10.1101/gad.12.13.1998. Genes Dev. 1998. PMID: 9649504 Free PMC article.

9

Exonic splicing enhancer motif recognized by human SC35 under splicing conditions.

Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. Liu HX, et al. Among authors: zhang mq. Mol Cell Biol. 2000 Feb;20(3):1063-71. doi: 10.1128/MCB.20.3.1063-1071.2000. Mol Cell Biol. 2000. PMID: 10629063 Free PMC article.

10

A mechanism for exon skipping caused by nonsense or missense mutations in BRCA1 and other genes.

Liu HX, Cartegni L, Zhang MQ, Krainer AR. Liu HX, et al. Among authors: zhang mq. Nat Genet. 2001 Jan;27(1):55-8. doi: 10.1038/83762. Nat Genet. 2001. PMID: 11137998

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