Alm E - Search Results

1

Global transcriptome analysis of the heat shock response of Shewanella oneidensis.

Gao H, Wang Y, Liu X, Yan T, Wu L, Alm E, Arkin A, Thompson DK, Zhou J. Gao H, et al. Among authors: alm e. J Bacteriol. 2004 Nov;186(22):7796-803. doi: 10.1128/JB.186.22.7796-7803.2004. J Bacteriol. 2004. PMID: 15516594 Free PMC article.

2

Biological networks.

Alm E, Arkin AP. Alm E, et al. Curr Opin Struct Biol. 2003 Apr;13(2):193-202. doi: 10.1016/s0959-440x(03)00031-9. Curr Opin Struct Biol. 2003. PMID: 12727512 Review.

3

Reconstruction of regulatory and metabolic pathways in metal-reducing delta-proteobacteria.

Rodionov DA, Dubchak I, Arkin A, Alm E, Gelfand MS. Rodionov DA, et al. Among authors: alm e. Genome Biol. 2004;5(11):R90. doi: 10.1186/gb-2004-5-11-r90. Epub 2004 Oct 22. Genome Biol. 2004. PMID: 15535866 Free PMC article.

4

A novel method for accurate operon predictions in all sequenced prokaryotes.

Price MN, Huang KH, Alm EJ, Arkin AP. Price MN, et al. Nucleic Acids Res. 2005 Feb 8;33(3):880-92. doi: 10.1093/nar/gki232. Print 2005. Nucleic Acids Res. 2005. PMID: 15701760 Free PMC article.

5

Transcriptome analysis of Shewanella oneidensis MR-1 in response to elevated salt conditions.

Liu Y, Gao W, Wang Y, Wu L, Liu X, Yan T, Alm E, Arkin A, Thompson DK, Fields MW, Zhou J. Liu Y, et al. Among authors: alm e. J Bacteriol. 2005 Apr;187(7):2501-7. doi: 10.1128/JB.187.7.2501-2507.2005. J Bacteriol. 2005. PMID: 15774893 Free PMC article.

6

Operon formation is driven by co-regulation and not by horizontal gene transfer.

Price MN, Huang KH, Arkin AP, Alm EJ. Price MN, et al. Genome Res. 2005 Jun;15(6):809-19. doi: 10.1101/gr.3368805. Genome Res. 2005. PMID: 15930492 Free PMC article.

7

Interruptions in gene expression drive highly expressed operons to the leading strand of DNA replication.

Price MN, Alm EJ, Arkin AP. Price MN, et al. Nucleic Acids Res. 2005 Jun 7;33(10):3224-34. doi: 10.1093/nar/gki638. Print 2005. Nucleic Acids Res. 2005. PMID: 15942025 Free PMC article.

8

The MicrobesOnline Web site for comparative genomics.

Alm EJ, Huang KH, Price MN, Koche RP, Keller K, Dubchak IL, Arkin AP. Alm EJ, et al. Genome Res. 2005 Jul;15(7):1015-22. doi: 10.1101/gr.3844805. Genome Res. 2005. PMID: 15998914 Free PMC article.

9

Dissimilatory metabolism of nitrogen oxides in bacteria: comparative reconstruction of transcriptional networks.

Rodionov DA, Dubchak IL, Arkin AP, Alm EJ, Gelfand MS. Rodionov DA, et al. PLoS Comput Biol. 2005 Oct;1(5):e55. doi: 10.1371/journal.pcbi.0010055. Epub 2005 Oct 28. PLoS Comput Biol. 2005. PMID: 16261196 Free PMC article.

10

Cellular response of Shewanella oneidensis to strontium stress.

Brown SD, Martin M, Deshpande S, Seal S, Huang K, Alm E, Yang Y, Wu L, Yan T, Liu X, Arkin A, Chourey K, Zhou J, Thompson DK. Brown SD, et al. Among authors: alm e. Appl Environ Microbiol. 2006 Jan;72(1):890-900. doi: 10.1128/AEM.72.1.890-900.2006. Appl Environ Microbiol. 2006. PMID: 16391131 Free PMC article.

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