Liu XS - Search Results

1

A boosting approach for motif modeling using ChIP-chip data.

Hong P, Liu XS, Zhou Q, Lu X, Liu JS, Wong WH. Hong P, et al. Among authors: liu js, liu xs. Bioinformatics. 2005 Jun 1;21(11):2636-43. doi: 10.1093/bioinformatics/bti402. Epub 2005 Apr 7. Bioinformatics. 2005. PMID: 15817698

2

An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments.

Liu XS, Brutlag DL, Liu JS. Liu XS, et al. Among authors: liu js. Nat Biotechnol. 2002 Aug;20(8):835-9. doi: 10.1038/nbt717. Epub 2002 Jul 8. Nat Biotechnol. 2002. PMID: 12101404

3

Integrating regulatory motif discovery and genome-wide expression analysis.

Conlon EM, Liu XS, Lieb JD, Liu JS. Conlon EM, et al. Among authors: liu js, liu xs. Proc Natl Acad Sci U S A. 2003 Mar 18;100(6):3339-44. doi: 10.1073/pnas.0630591100. Epub 2003 Mar 7. Proc Natl Acad Sci U S A. 2003. PMID: 12626739 Free PMC article.

4

A suite of web-based programs to search for transcriptional regulatory motifs.

Liu Y, Wei L, Batzoglou S, Brutlag DL, Liu JS, Liu XS. Liu Y, et al. Among authors: liu js, liu xs. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W204-7. doi: 10.1093/nar/gkh461. Nucleic Acids Res. 2004. PMID: 15215381 Free PMC article.

5

A hidden Markov model for analyzing ChIP-chip experiments on genome tiling arrays and its application to p53 binding sequences.

Li W, Meyer CA, Liu XS. Li W, et al. Among authors: liu xs. Bioinformatics. 2005 Jun;21 Suppl 1:i274-82. doi: 10.1093/bioinformatics/bti1046. Bioinformatics. 2005. PMID: 15961467

6

Model-based analysis of two-color arrays (MA2C).

Song JS, Johnson WE, Zhu X, Zhang X, Li W, Manrai AK, Liu JS, Chen R, Liu XS. Song JS, et al. Among authors: liu js, liu xs. Genome Biol. 2007;8(8):R178. doi: 10.1186/gb-2007-8-8-r178. Genome Biol. 2007. PMID: 17727723 Free PMC article.

7

CEAS: cis-regulatory element annotation system.

Shin H, Liu T, Manrai AK, Liu XS. Shin H, et al. Among authors: liu xs, liu t. Bioinformatics. 2009 Oct 1;25(19):2605-6. doi: 10.1093/bioinformatics/btp479. Epub 2009 Aug 18. Bioinformatics. 2009. PMID: 19689956

8

BINOCh: binding inference from nucleosome occupancy changes.

Meyer CA, He HH, Brown M, Liu XS. Meyer CA, et al. Among authors: liu xs. Bioinformatics. 2011 Jul 1;27(13):1867-8. doi: 10.1093/bioinformatics/btr279. Epub 2011 May 5. Bioinformatics. 2011. PMID: 21551136 Free PMC article.

9

Sequence determinants of improved CRISPR sgRNA design.

Xu H, Xiao T, Chen CH, Li W, Meyer CA, Wu Q, Wu D, Cong L, Zhang F, Liu JS, Brown M, Liu XS. Xu H, et al. Among authors: liu js, liu xs. Genome Res. 2015 Aug;25(8):1147-57. doi: 10.1101/gr.191452.115. Epub 2015 Jun 10. Genome Res. 2015. PMID: 26063738 Free PMC article.

10

Network analysis of gene essentiality in functional genomics experiments.

Jiang P, Wang H, Li W, Zang C, Li B, Wong YJ, Meyer C, Liu JS, Aster JC, Liu XS. Jiang P, et al. Among authors: liu js, liu xs. Genome Biol. 2015 Oct 30;16:239. doi: 10.1186/s13059-015-0808-9. Genome Biol. 2015. PMID: 26518695 Free PMC article.

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