Farnham PJ - Search Results

1

CpG Island microarray probe sequences derived from a physical library are representative of CpG Islands annotated on the human genome.

Heisler LE, Torti D, Boutros PC, Watson J, Chan C, Winegarden N, Takahashi M, Yau P, Huang TH, Farnham PJ, Jurisica I, Woodgett JR, Bremner R, Penn LZ, Der SD. Heisler LE, et al. Among authors: farnham pj. Nucleic Acids Res. 2005 May 23;33(9):2952-61. doi: 10.1093/nar/gki582. Print 2005. Nucleic Acids Res. 2005. PMID: 15911630 Free PMC article.

2

Identification of novel pRb binding sites using CpG microarrays suggests that E2F recruits pRb to specific genomic sites during S phase.

Wells J, Yan PS, Cechvala M, Huang T, Farnham PJ. Wells J, et al. Among authors: farnham pj. Oncogene. 2003 Mar 13;22(10):1445-60. doi: 10.1038/sj.onc.1206264. Oncogene. 2003. PMID: 12629508

3

Analysis of Myc bound loci identified by CpG island arrays shows that Max is essential for Myc-dependent repression.

Mao DY, Watson JD, Yan PS, Barsyte-Lovejoy D, Khosravi F, Wong WW, Farnham PJ, Huang TH, Penn LZ. Mao DY, et al. Among authors: farnham pj. Curr Biol. 2003 May 13;13(10):882-6. doi: 10.1016/s0960-9822(03)00297-5. Curr Biol. 2003. PMID: 12747840 Free article.

4

High-throughput screening of chromatin immunoprecipitates using CpG-island microarrays.

Oberley MJ, Tsao J, Yau P, Farnham PJ. Oberley MJ, et al. Among authors: farnham pj. Methods Enzymol. 2004;376:315-34. doi: 10.1016/S0076-6879(03)76021-2. Methods Enzymol. 2004. PMID: 14975315 Review. No abstract available.

5

Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis.

Weinmann AS, Yan PS, Oberley MJ, Huang TH, Farnham PJ. Weinmann AS, et al. Among authors: farnham pj. Genes Dev. 2002 Jan 15;16(2):235-44. doi: 10.1101/gad.943102. Genes Dev. 2002. PMID: 11799066 Free PMC article.

6

Genome-scale ChIP-chip analysis using 10,000 human cells.

Acevedo LG, Iniguez AL, Holster HL, Zhang X, Green R, Farnham PJ. Acevedo LG, et al. Among authors: farnham pj. Biotechniques. 2007 Dec;43(6):791-7. doi: 10.2144/000112625. Biotechniques. 2007. PMID: 18251256 Free PMC article.

7

Using ChIPMotifs for de novo motif discovery of OCT4 and ZNF263 based on ChIP-based high-throughput experiments.

Kennedy BA, Lan X, Huang TH, Farnham PJ, Jin VX. Kennedy BA, et al. Among authors: farnham pj. Methods Mol Biol. 2012;802:323-34. doi: 10.1007/978-1-61779-400-1_21. Methods Mol Biol. 2012. PMID: 22130890 Free PMC article.

8

Characterization of the ZFX family of transcription factors that bind downstream of the start site of CpG island promoters.

Ni W, Perez AA, Schreiner S, Nicolet CM, Farnham PJ. Ni W, et al. Among authors: farnham pj. Nucleic Acids Res. 2020 Jun 19;48(11):5986-6000. doi: 10.1093/nar/gkaa384. Nucleic Acids Res. 2020. PMID: 32406922 Free PMC article.

9

Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages.

Lan X, Witt H, Katsumura K, Ye Z, Wang Q, Bresnick EH, Farnham PJ, Jin VX. Lan X, et al. Among authors: farnham pj. Nucleic Acids Res. 2012 Sep;40(16):7690-704. doi: 10.1093/nar/gks501. Epub 2012 Jun 6. Nucleic Acids Res. 2012. PMID: 22675074 Free PMC article.

10

LOcating non-unique matched tags (LONUT) to improve the detection of the enriched regions for ChIP-seq data.

Wang R, Hsu HK, Blattler A, Wang Y, Lan X, Wang Y, Hsu PY, Leu YW, Huang TH, Farnham PJ, Jin VX. Wang R, et al. Among authors: farnham pj. PLoS One. 2013 Jun 25;8(6):e67788. doi: 10.1371/journal.pone.0067788. Print 2013. PLoS One. 2013. PMID: 23825685 Free PMC article.

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