Huang KH - Search Results

1

Operon formation is driven by co-regulation and not by horizontal gene transfer.

Price MN, Huang KH, Arkin AP, Alm EJ. Price MN, et al. Among authors: huang kh. Genome Res. 2005 Jun;15(6):809-19. doi: 10.1101/gr.3368805. Genome Res. 2005. PMID: 15930492 Free PMC article.

2

A novel method for accurate operon predictions in all sequenced prokaryotes.

Price MN, Huang KH, Alm EJ, Arkin AP. Price MN, et al. Among authors: huang kh. Nucleic Acids Res. 2005 Feb 8;33(3):880-92. doi: 10.1093/nar/gki232. Print 2005. Nucleic Acids Res. 2005. PMID: 15701760 Free PMC article.

3

The MicrobesOnline Web site for comparative genomics.

Alm EJ, Huang KH, Price MN, Koche RP, Keller K, Dubchak IL, Arkin AP. Alm EJ, et al. Among authors: huang kh. Genome Res. 2005 Jul;15(7):1015-22. doi: 10.1101/gr.3844805. Genome Res. 2005. PMID: 15998914 Free PMC article.

4

Salt stress in Desulfovibrio vulgaris Hildenborough: an integrated genomics approach.

Mukhopadhyay A, He Z, Alm EJ, Arkin AP, Baidoo EE, Borglin SC, Chen W, Hazen TC, He Q, Holman HY, Huang K, Huang R, Joyner DC, Katz N, Keller M, Oeller P, Redding A, Sun J, Wall J, Wei J, Yang Z, Yen HC, Zhou J, Keasling JD. Mukhopadhyay A, et al. J Bacteriol. 2006 Jun;188(11):4068-78. doi: 10.1128/JB.01921-05. J Bacteriol. 2006. PMID: 16707698 Free PMC article.

5

The evolution of two-component systems in bacteria reveals different strategies for niche adaptation.

Alm E, Huang K, Arkin A. Alm E, et al. PLoS Comput Biol. 2006 Nov 3;2(11):e143. doi: 10.1371/journal.pcbi.0020143. PLoS Comput Biol. 2006. PMID: 17083272 Free PMC article.

6

MicrobesOnline: an integrated portal for comparative and functional genomics.

Dehal PS, Joachimiak MP, Price MN, Bates JT, Baumohl JK, Chivian D, Friedland GD, Huang KH, Keller K, Novichkov PS, Dubchak IL, Alm EJ, Arkin AP. Dehal PS, et al. Among authors: huang kh. Nucleic Acids Res. 2010 Jan;38(Database issue):D396-400. doi: 10.1093/nar/gkp919. Epub 2009 Nov 11. Nucleic Acids Res. 2010. PMID: 19906701 Free PMC article.

7

Energetic consequences of nitrite stress in Desulfovibrio vulgaris Hildenborough, inferred from global transcriptional analysis.

He Q, Huang KH, He Z, Alm EJ, Fields MW, Hazen TC, Arkin AP, Wall JD, Zhou J. He Q, et al. Among authors: huang kh. Appl Environ Microbiol. 2006 Jun;72(6):4370-81. doi: 10.1128/AEM.02609-05. Appl Environ Microbiol. 2006. PMID: 16751553 Free PMC article.

8

Analysis of a ferric uptake regulator (Fur) mutant of Desulfovibrio vulgaris Hildenborough.

Bender KS, Yen HC, Hemme CL, Yang Z, He Z, He Q, Zhou J, Huang KH, Alm EJ, Hazen TC, Arkin AP, Wall JD. Bender KS, et al. Among authors: huang kh. Appl Environ Microbiol. 2007 Sep;73(17):5389-400. doi: 10.1128/AEM.00276-07. Epub 2007 Jul 13. Appl Environ Microbiol. 2007. PMID: 17630305 Free PMC article.

9

Temporal transcriptomic analysis as Desulfovibrio vulgaris Hildenborough transitions into stationary phase during electron donor depletion.

Clark ME, He Q, He Z, Huang KH, Alm EJ, Wan XF, Hazen TC, Arkin AP, Wall JD, Zhou JZ, Fields MW. Clark ME, et al. Among authors: huang kh. Appl Environ Microbiol. 2006 Aug;72(8):5578-88. doi: 10.1128/AEM.00284-06. Appl Environ Microbiol. 2006. PMID: 16885312 Free PMC article.

10

Transcriptome profiling of Shewanella oneidensis gene expression following exposure to acidic and alkaline pH.

Leaphart AB, Thompson DK, Huang K, Alm E, Wan XF, Arkin A, Brown SD, Wu L, Yan T, Liu X, Wickham GS, Zhou J. Leaphart AB, et al. J Bacteriol. 2006 Feb;188(4):1633-42. doi: 10.1128/JB.188.4.1633-1642.2006. J Bacteriol. 2006. PMID: 16452448 Free PMC article.

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