Fujita A - Search Results

1

The GATO gene annotation tool for research laboratories.

Fujita A, Massirer KB, Durham AM, Ferreira CE, Sogayar MC. Fujita A, et al. Braz J Med Biol Res. 2005 Nov;38(11):1571-4. doi: 10.1590/s0100-879x2005001100002. Epub 2005 Oct 26. Braz J Med Biol Res. 2005. PMID: 16258624 Free article.

2

Evaluating different methods of microarray data normalization.

Fujita A, Sato JR, Rodrigues Lde O, Ferreira CE, Sogayar MC. Fujita A, et al. BMC Bioinformatics. 2006 Oct 23;7:469. doi: 10.1186/1471-2105-7-469. BMC Bioinformatics. 2006. PMID: 17059609 Free PMC article.

3

Time-varying modeling of gene expression regulatory networks using the wavelet dynamic vector autoregressive method.

Fujita A, Sato JR, Garay-Malpartida HM, Morettin PA, Sogayar MC, Ferreira CE. Fujita A, et al. Bioinformatics. 2007 Jul 1;23(13):1623-30. doi: 10.1093/bioinformatics/btm151. Epub 2007 Apr 26. Bioinformatics. 2007. PMID: 17463021

4

Modeling gene expression regulatory networks with the sparse vector autoregressive model.

Fujita A, Sato JR, Garay-Malpartida HM, Yamaguchi R, Miyano S, Sogayar MC, Ferreira CE. Fujita A, et al. BMC Syst Biol. 2007 Aug 30;1:39. doi: 10.1186/1752-0509-1-39. BMC Syst Biol. 2007. PMID: 17761000 Free PMC article.

5

GEDI: a user-friendly toolbox for analysis of large-scale gene expression data.

Fujita A, Sato JR, Ferreira CE, Sogayar MC. Fujita A, et al. BMC Bioinformatics. 2007 Nov 19;8:457. doi: 10.1186/1471-2105-8-457. BMC Bioinformatics. 2007. PMID: 18021455 Free PMC article.

RESULTS: Here, we introduce an user-friendly toolbox called GEDI (Gene Expression Data Interpreter), an extensible, open-source, and freely-available tool that we believe will be useful to a wide range of laboratories, and to researchers with no background in Mathematics a …

RESULTS: Here, we introduce an user-friendly toolbox called GEDI (Gene Expression Data Interpreter), an extensible, open-source, and freely- …

6

Identification of COL6A1 as a differentially expressed gene in human astrocytomas.

Fujita A, Sato JR, Festa F, Gomes LR, Oba-Shinjo SM, Marie SK, Ferreira CE, Sogayar MC. Fujita A, et al. Genet Mol Res. 2008 Apr 22;7(2):371-8. doi: 10.4238/vol7-2gmr432. Genet Mol Res. 2008. PMID: 18551403 Free article.

7

Modeling nonlinear gene regulatory networks from time series gene expression data.

Fujita A, Sato JR, Garay-Malpartida HM, Sogayar MC, Ferreira CE, Miyano S. Fujita A, et al. J Bioinform Comput Biol. 2008 Oct;6(5):961-79. doi: 10.1142/s0219720008003746. J Bioinform Comput Biol. 2008. PMID: 18942161

8

Comparing Pearson, Spearman and Hoeffding's D measure for gene expression association analysis.

Fujita A, Sato JR, Demasi MA, Sogayar MC, Ferreira CE, Miyano S. Fujita A, et al. J Bioinform Comput Biol. 2009 Aug;7(4):663-84. doi: 10.1142/s0219720009004230. J Bioinform Comput Biol. 2009. PMID: 19634197

9

Quality control and reproducibility in DNA microarray experiments.

Fujita A, Sato JR, DA Silva FH, Galvão MC, Sogayar MC, Miyano S. Fujita A, et al. Genome Inform. 2009 Oct;23(1):21-31. Genome Inform. 2009. PMID: 20180259

10

Inferring contagion in regulatory networks.

Fujita A, Sato JR, Angelo M, Demasi A, Yamaguchi R, Shimamura T, Ferreira CE, Sogayar MC, Miyano S. Fujita A, et al. IEEE/ACM Trans Comput Biol Bioinform. 2011 Mar-Apr;8(2):570-76. doi: 10.1109/TCBB.2010.40. IEEE/ACM Trans Comput Biol Bioinform. 2011. PMID: 20479499

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