Chen T - Search Results

1

Using proteomics and network analysis to elucidate the consequences of synaptic protein oxidation in a PS1 + AbetaPP mouse model of Alzheimer's disease.

Soreghan BA, Lu BW, Thomas SN, Duff K, Rakhmatulin EA, Nikolskaya T, Chen T, Yang AJ. Soreghan BA, et al. Among authors: chen t. J Alzheimers Dis. 2005 Dec;8(3):227-41. doi: 10.3233/jad-2005-8302. J Alzheimers Dis. 2005. PMID: 16340081

2

A suboptimal algorithm for de novo peptide sequencing via tandem mass spectrometry.

Lu B, Chen T. Lu B, et al. Among authors: chen t. J Comput Biol. 2003;10(1):1-12. doi: 10.1089/106652703763255633. J Comput Biol. 2003. PMID: 12676047

3

A suffix tree approach to the interpretation of tandem mass spectra: applications to peptides of non-specific digestion and post-translational modifications.

Lu B, Chen T. Lu B, et al. Among authors: chen t. Bioinformatics. 2003 Oct;19 Suppl 2:ii113-21. doi: 10.1093/bioinformatics/btg1068. Bioinformatics. 2003. PMID: 14534180

4

PepHMM: a hidden Markov model based scoring function for mass spectrometry database search.

Wan Y, Yang A, Chen T. Wan Y, et al. Among authors: chen t. Anal Chem. 2006 Jan 15;78(2):432-7. doi: 10.1021/ac051319a. Anal Chem. 2006. PMID: 16408924

5

PhosphoScan: a probability-based method for phosphorylation site prediction using MS2/MS3 pair information.

Wan Y, Cripps D, Thomas S, Campbell P, Ambulos N, Chen T, Yang A. Wan Y, et al. Among authors: chen t. J Proteome Res. 2008 Jul;7(7):2803-11. doi: 10.1021/pr700773p. Epub 2008 Jun 13. J Proteome Res. 2008. PMID: 18549264 Free PMC article.

6

An integrated probabilistic model for functional prediction of proteins.

Deng M, Chen T, Sun F. Deng M, et al. Among authors: chen t. J Comput Biol. 2004;11(2-3):463-75. doi: 10.1089/1066527041410346. J Comput Biol. 2004. PMID: 15285902

7

Network motif identification in stochastic networks.

Jiang R, Tu Z, Chen T, Sun F. Jiang R, et al. Among authors: chen t. Proc Natl Acad Sci U S A. 2006 Jun 20;103(25):9404-9. doi: 10.1073/pnas.0507841103. Epub 2006 Jun 12. Proc Natl Acad Sci U S A. 2006. PMID: 16769903 Free PMC article.

8

Prediction of protein function using protein-protein interaction data.

Deng M, Zhang K, Mehta S, Chen T, Sun F. Deng M, et al. Among authors: chen t. Proc IEEE Comput Soc Bioinform Conf. 2002;1:197-206. Proc IEEE Comput Soc Bioinform Conf. 2002. PMID: 15838136

9

An integrative approach for causal gene identification and gene regulatory pathway inference.

Tu Z, Wang L, Arbeitman MN, Chen T, Sun F. Tu Z, et al. Among authors: chen t. Bioinformatics. 2006 Jul 15;22(14):e489-96. doi: 10.1093/bioinformatics/btl234. Bioinformatics. 2006. PMID: 16873511

10

Modeling RNA degradation for RNA-Seq with applications.

Wan L, Yan X, Chen T, Sun F. Wan L, et al. Among authors: chen t. Biostatistics. 2012 Sep;13(4):734-47. doi: 10.1093/biostatistics/kxs001. Epub 2012 Feb 21. Biostatistics. 2012. PMID: 22353193 Free PMC article.

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