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Page 1
The UCSC Archaeal Genome Browser.
Schneider KL, Pollard KS, Baertsch R, Pohl A, Lowe TM. Schneider KL, et al. Among authors: baertsch r. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D407-10. doi: 10.1093/nar/gkj134. Nucleic Acids Res. 2006. PMID: 16381898 Free PMC article.
The UCSC Genome Browser Database: update 2006.
Hinrichs AS, Karolchik D, Baertsch R, Barber GP, Bejerano G, Clawson H, Diekhans M, Furey TS, Harte RA, Hsu F, Hillman-Jackson J, Kuhn RM, Pedersen JS, Pohl A, Raney BJ, Rosenbloom KR, Siepel A, Smith KE, Sugnet CW, Sultan-Qurraie A, Thomas DJ, Trumbower H, Weber RJ, Weirauch M, Zweig AS, Haussler D, Kent WJ. Hinrichs AS, et al. Among authors: baertsch r. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D590-8. doi: 10.1093/nar/gkj144. Nucleic Acids Res. 2006. PMID: 16381938 Free PMC article.
The UCSC genome browser database: update 2007.
Kuhn RM, Karolchik D, Zweig AS, Trumbower H, Thomas DJ, Thakkapallayil A, Sugnet CW, Stanke M, Smith KE, Siepel A, Rosenbloom KR, Rhead B, Raney BJ, Pohl A, Pedersen JS, Hsu F, Hinrichs AS, Harte RA, Diekhans M, Clawson H, Bejerano G, Barber GP, Baertsch R, Haussler D, Kent WJ. Kuhn RM, et al. Among authors: baertsch r. Nucleic Acids Res. 2007 Jan;35(Database issue):D668-73. doi: 10.1093/nar/gkl928. Epub 2006 Nov 16. Nucleic Acids Res. 2007. PMID: 17142222 Free PMC article.
The UCSC Genome Browser Database: 2008 update.
Karolchik D, Kuhn RM, Baertsch R, Barber GP, Clawson H, Diekhans M, Giardine B, Harte RA, Hinrichs AS, Hsu F, Kober KM, Miller W, Pedersen JS, Pohl A, Raney BJ, Rhead B, Rosenbloom KR, Smith KE, Stanke M, Thakkapallayil A, Trumbower H, Wang T, Zweig AS, Haussler D, Kent WJ. Karolchik D, et al. Among authors: baertsch r. Nucleic Acids Res. 2008 Jan;36(Database issue):D773-9. doi: 10.1093/nar/gkm966. Epub 2007 Dec 17. Nucleic Acids Res. 2008. PMID: 18086701 Free PMC article.
The UCSC Genome Browser Database.
Karolchik D, Baertsch R, Diekhans M, Furey TS, Hinrichs A, Lu YT, Roskin KM, Schwartz M, Sugnet CW, Thomas DJ, Weber RJ, Haussler D, Kent WJ; University of California Santa Cruz. Karolchik D, et al. Among authors: baertsch r. Nucleic Acids Res. 2003 Jan 1;31(1):51-4. doi: 10.1093/nar/gkg129. Nucleic Acids Res. 2003. PMID: 12519945 Free PMC article.
Forces shaping the fastest evolving regions in the human genome.
Pollard KS, Salama SR, King B, Kern AD, Dreszer T, Katzman S, Siepel A, Pedersen JS, Bejerano G, Baertsch R, Rosenbloom KR, Kent J, Haussler D. Pollard KS, et al. Among authors: baertsch r. PLoS Genet. 2006 Oct 13;2(10):e168. doi: 10.1371/journal.pgen.0020168. Epub 2006 Aug 23. PLoS Genet. 2006. PMID: 17040131 Free PMC article.
Current status and new features of the Consensus Coding Sequence database.
Farrell CM, O'Leary NA, Harte RA, Loveland JE, Wilming LG, Wallin C, Diekhans M, Barrell D, Searle SM, Aken B, Hiatt SM, Frankish A, Suner MM, Rajput B, Steward CA, Brown GR, Bennett R, Murphy M, Wu W, Kay MP, Hart J, Rajan J, Weber J, Snow C, Riddick LD, Hunt T, Webb D, Thomas M, Tamez P, Rangwala SH, McGarvey KM, Pujar S, Shkeda A, Mudge JM, Gonzalez JM, Gilbert JG, Trevanion SJ, Baertsch R, Harrow JL, Hubbard T, Ostell JM, Haussler D, Pruitt KD. Farrell CM, et al. Among authors: baertsch r. Nucleic Acids Res. 2014 Jan;42(Database issue):D865-72. doi: 10.1093/nar/gkt1059. Epub 2013 Nov 11. Nucleic Acids Res. 2014. PMID: 24217909 Free PMC article.
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.
ENCODE Project Consortium; Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, Thurman RE, Kuehn MS, Taylor CM, Neph S, Koch CM, Asthana S, Malhotra A, Adzhubei I, Greenbaum JA, Andrews RM, Flicek P, Boyle PJ, Cao H, Carter NP, Clelland GK, Davis S, Day N, Dhami P, Dillon SC, Dorschner MO, Fiegler H, Giresi PG, Goldy J, Hawrylycz M, Haydock A, Humbert R, James KD, Johnson BE, Johnson EM, Frum TT, Rosenzweig ER, Karnani N, Lee K, Lefebvre GC, Navas PA, Neri F, Parker SC, Sabo PJ, Sandstrom R, Shafer A, Vetrie D, Weaver M, Wilcox S, Yu M, Collins FS, Dekker J, Lieb JD, Tullius TD, Crawford GE, Sunyaev S, Noble WS, Dunham I, Denoeud F, Reymond A, Kapranov P, Rozowsky J, Zheng D, Castelo R, Frankish A, Harrow J, Ghosh S, Sandelin A, Hofacker IL, Baertsch R, Keefe D, Dike S, Cheng J, Hirsch HA, Sekinger EA, Lagarde J, Abril JF, Shahab A, Flamm C, Fried C, Hackermüller J, Hertel J, Lindemeyer M, Missal K, Tanzer A, Washietl S, Korbel J, Emanuelsson O, Pedersen JS, Holroyd N, Taylor R, Swarbreck D, Matthews N, Dickson MC, Thomas DJ, Weirauch MT, Gilbert J, Drenkow J, Bell I, Zhao X, Srinivasan KG, Sung WK, Ooi HS, Chiu KP… See abstract for full author list ➔ ENCODE Project Consortium, et al. Among authors: baertsch r. Nature. 2007 Jun 14;447(7146):799-816. doi: 10.1038/nature05874. Nature. 2007. PMID: 17571346 Free PMC article.
Aligning multiple genomic sequences with the threaded blockset aligner.
Blanchette M, Kent WJ, Riemer C, Elnitski L, Smit AF, Roskin KM, Baertsch R, Rosenbloom K, Clawson H, Green ED, Haussler D, Miller W. Blanchette M, et al. Among authors: baertsch r. Genome Res. 2004 Apr;14(4):708-15. doi: 10.1101/gr.1933104. Genome Res. 2004. PMID: 15060014 Free PMC article.
39 results