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A new method to remove hybridization bias for interspecies comparison of global gene expression profiles uncovers an association between mRNA sequence divergence and differential gene expression in Xenopus.
Sartor MA, Zorn AM, Schwanekamp JA, Halbleib D, Karyala S, Howell ML, Dean GE, Medvedovic M, Tomlinson CR. Sartor MA, et al. Among authors: zorn am. Nucleic Acids Res. 2006 Jan 5;34(1):185-200. doi: 10.1093/nar/gkj413. Print 2006. Nucleic Acids Res. 2006. PMID: 16397297 Free PMC article.
Xenbase: expansion and updates of the Xenopus model organism database.
James-Zorn C, Ponferrada VG, Jarabek CJ, Burns KA, Segerdell EJ, Lee J, Snyder K, Bhattacharyya B, Karpinka JB, Fortriede J, Bowes JB, Zorn AM, Vize PD. James-Zorn C, et al. Among authors: zorn am. Nucleic Acids Res. 2013 Jan;41(Database issue):D865-70. doi: 10.1093/nar/gks1025. Epub 2012 Nov 3. Nucleic Acids Res. 2013. PMID: 23125366 Free PMC article.
Xenopus genomic data and browser resources.
Vize PD, Zorn AM. Vize PD, et al. Among authors: zorn am. Dev Biol. 2017 Jun 15;426(2):194-199. doi: 10.1016/j.ydbio.2016.03.030. Epub 2016 Mar 31. Dev Biol. 2017. PMID: 27039265 Free PMC article. Review.
Xenbase: a genomic, epigenomic and transcriptomic model organism database.
Karimi K, Fortriede JD, Lotay VS, Burns KA, Wang DZ, Fisher ME, Pells TJ, James-Zorn C, Wang Y, Ponferrada VG, Chu S, Chaturvedi P, Zorn AM, Vize PD. Karimi K, et al. Among authors: zorn am. Nucleic Acids Res. 2018 Jan 4;46(D1):D861-D868. doi: 10.1093/nar/gkx936. Nucleic Acids Res. 2018. PMID: 29059324 Free PMC article.
Navigating Xenbase: An Integrated Xenopus Genomics and Gene Expression Database.
James-Zorn C, Ponferrada V, Fisher ME, Burns K, Fortriede J, Segerdell E, Karimi K, Lotay V, Wang DZ, Chu S, Pells T, Wang Y, Vize PD, Zorn A. James-Zorn C, et al. Methods Mol Biol. 2018;1757:251-305. doi: 10.1007/978-1-4939-7737-6_10. Methods Mol Biol. 2018. PMID: 29761462 Free PMC article.
151 results