Haas BJ - Search Results

1

Comparative genomics of Brassica oleracea and Arabidopsis thaliana reveal gene loss, fragmentation, and dispersal after polyploidy.

Town CD, Cheung F, Maiti R, Crabtree J, Haas BJ, Wortman JR, Hine EE, Althoff R, Arbogast TS, Tallon LJ, Vigouroux M, Trick M, Bancroft I. Town CD, et al. Among authors: haas bj. Plant Cell. 2006 Jun;18(6):1348-59. doi: 10.1105/tpc.106.041665. Epub 2006 Apr 21. Plant Cell. 2006. PMID: 16632643 Free PMC article.

2

Gene expression analyses of Arabidopsis chromosome 2 using a genomic DNA amplicon microarray.

Kim H, Snesrud EC, Haas B, Cheung F, Town CD, Quackenbush J. Kim H, et al. Genome Res. 2003 Mar;13(3):327-40. doi: 10.1101/gr.552003. Genome Res. 2003. PMID: 12618363 Free PMC article.

3

The institute for genomic research Osa1 rice genome annotation database.

Yuan Q, Ouyang S, Wang A, Zhu W, Maiti R, Lin H, Hamilton J, Haas B, Sultana R, Cheung F, Wortman J, Buell CR. Yuan Q, et al. Plant Physiol. 2005 May;138(1):18-26. doi: 10.1104/pp.104.059063. Plant Physiol. 2005. PMID: 15888674 Free PMC article.

4

Annotation of the Arabidopsis genome.

Wortman JR, Haas BJ, Hannick LI, Smith RK Jr, Maiti R, Ronning CM, Chan AP, Yu C, Ayele M, Whitelaw CA, White OR, Town CD. Wortman JR, et al. Among authors: haas bj. Plant Physiol. 2003 Jun;132(2):461-8. doi: 10.1104/pp.103.022251. Plant Physiol. 2003. PMID: 12805579 Free PMC article. No abstract available.

5

Development and evaluation of an Arabidopsis whole genome Affymetrix probe array.

Redman JC, Haas BJ, Tanimoto G, Town CD. Redman JC, et al. Among authors: haas bj. Plant J. 2004 May;38(3):545-61. doi: 10.1111/j.1365-313X.2004.02061.x. Plant J. 2004. PMID: 15086809 Free article.

6

Whole genome shotgun sequencing of Brassica oleracea and its application to gene discovery and annotation in Arabidopsis.

Ayele M, Haas BJ, Kumar N, Wu H, Xiao Y, Van Aken S, Utterback TR, Wortman JR, White OR, Town CD. Ayele M, et al. Among authors: haas bj. Genome Res. 2005 Apr;15(4):487-95. doi: 10.1101/gr.3176505. Genome Res. 2005. PMID: 15805490 Free PMC article.

7

Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies.

Haas BJ, Delcher AL, Mount SM, Wortman JR, Smith RK Jr, Hannick LI, Maiti R, Ronning CM, Rusch DB, Town CD, Salzberg SL, White O. Haas BJ, et al. Nucleic Acids Res. 2003 Oct 1;31(19):5654-66. doi: 10.1093/nar/gkg770. Nucleic Acids Res. 2003. PMID: 14500829 Free PMC article.

8

DAGchainer: a tool for mining segmental genome duplications and synteny.

Haas BJ, Delcher AL, Wortman JR, Salzberg SL. Haas BJ, et al. Bioinformatics. 2004 Dec 12;20(18):3643-6. doi: 10.1093/bioinformatics/bth397. Epub 2004 Jul 9. Bioinformatics. 2004. PMID: 15247098

9

Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final release.

Haas BJ, Wortman JR, Ronning CM, Hannick LI, Smith RK Jr, Maiti R, Chan AP, Yu C, Farzad M, Wu D, White O, Town CD. Haas BJ, et al. BMC Biol. 2005 Mar 22;3:7. doi: 10.1186/1741-7007-3-7. BMC Biol. 2005. PMID: 15784138 Free PMC article.

10

Comparative genomics of trypanosomatid parasitic protozoa.

El-Sayed NM, Myler PJ, Blandin G, Berriman M, Crabtree J, Aggarwal G, Caler E, Renauld H, Worthey EA, Hertz-Fowler C, Ghedin E, Peacock C, Bartholomeu DC, Haas BJ, Tran AN, Wortman JR, Alsmark UC, Angiuoli S, Anupama A, Badger J, Bringaud F, Cadag E, Carlton JM, Cerqueira GC, Creasy T, Delcher AL, Djikeng A, Embley TM, Hauser C, Ivens AC, Kummerfeld SK, Pereira-Leal JB, Nilsson D, Peterson J, Salzberg SL, Shallom J, Silva JC, Sundaram J, Westenberger S, White O, Melville SE, Donelson JE, Andersson B, Stuart KD, Hall N. El-Sayed NM, et al. Among authors: haas bj. Science. 2005 Jul 15;309(5733):404-9. doi: 10.1126/science.1112181. Science. 2005. PMID: 16020724

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