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Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactions.
Kerrien S, Orchard S, Montecchi-Palazzi L, Aranda B, Quinn AF, Vinod N, Bader GD, Xenarios I, Wojcik J, Sherman D, Tyers M, Salama JJ, Moore S, Ceol A, Chatr-Aryamontri A, Oesterheld M, Stümpflen V, Salwinski L, Nerothin J, Cerami E, Cusick ME, Vidal M, Gilson M, Armstrong J, Woollard P, Hogue C, Eisenberg D, Cesareni G, Apweiler R, Hermjakob H. Kerrien S, et al. BMC Biol. 2007 Oct 9;5:44. doi: 10.1186/1741-7007-5-44. BMC Biol. 2007. PMID: 17925023 Free PMC article.
Pathway Commons, a web resource for biological pathway data.
Cerami EG, Gross BE, Demir E, Rodchenkov I, Babur O, Anwar N, Schultz N, Bader GD, Sander C. Cerami EG, et al. Nucleic Acids Res. 2011 Jan;39(Database issue):D685-90. doi: 10.1093/nar/gkq1039. Epub 2010 Nov 10. Nucleic Acids Res. 2011. PMID: 21071392 Free PMC article.
Using MEMo to discover mutual exclusivity modules in cancer.
Ciriello G, Cerami E, Aksoy BA, Sander C, Schultz N. Ciriello G, et al. Curr Protoc Bioinformatics. 2013 Mar;Chapter 8:8.17.1-8.17.12. doi: 10.1002/0471250953.bi0817s41. Curr Protoc Bioinformatics. 2013. PMID: 23504936 Free PMC article.
Pathway Commons 2019 Update: integration, analysis and exploration of pathway data.
Rodchenkov I, Babur O, Luna A, Aksoy BA, Wong JV, Fong D, Franz M, Siper MC, Cheung M, Wrana M, Mistry H, Mosier L, Dlin J, Wen Q, O'Callaghan C, Li W, Elder G, Smith PT, Dallago C, Cerami E, Gross B, Dogrusoz U, Demir E, Bader GD, Sander C. Rodchenkov I, et al. Nucleic Acids Res. 2020 Jan 8;48(D1):D489-D497. doi: 10.1093/nar/gkz946. Nucleic Acids Res. 2020. PMID: 31647099 Free PMC article.
40 results