Waters KM - Search Results

1

Data merging for integrated microarray and proteomic analysis.

Waters KM, Pounds JG, Thrall BD. Waters KM, et al. Brief Funct Genomic Proteomic. 2006 Dec;5(4):261-72. doi: 10.1093/bfgp/ell019. Epub 2006 May 10. Brief Funct Genomic Proteomic. 2006. PMID: 16772273 Review.

2

DNA microarray analysis reveals a role for lysophosphatidic acid in the regulation of anti-inflammatory genes in MC3T3-E1 cells.

Waters KM, Tan R, Genetos DC, Verma S, Yellowley CE, Karin NJ. Waters KM, et al. Bone. 2007 Nov;41(5):833-41. doi: 10.1016/j.bone.2007.06.029. Epub 2007 Aug 1. Bone. 2007. PMID: 17719864

3

The mammary epithelial cell secretome and its regulation by signal transduction pathways.

Jacobs JM, Waters KM, Kathmann LE, Camp DG 2nd, Wiley HS, Smith RD, Thrall BD. Jacobs JM, et al. Among authors: waters km. J Proteome Res. 2008 Feb;7(2):558-69. doi: 10.1021/pr0704377. Epub 2008 Jan 1. J Proteome Res. 2008. PMID: 18166007

4

Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models.

Rogers S, Girolami M, Kolch W, Waters KM, Liu T, Thrall B, Wiley HS. Rogers S, et al. Among authors: waters km. Bioinformatics. 2008 Dec 15;24(24):2894-900. doi: 10.1093/bioinformatics/btn553. Epub 2008 Oct 30. Bioinformatics. 2008. PMID: 18974169 Free PMC article.

5

Macrophage responses to silica nanoparticles are highly conserved across particle sizes.

Waters KM, Masiello LM, Zangar RC, Tarasevich BJ, Karin NJ, Quesenberry RD, Bandyopadhyay S, Teeguarden JG, Pounds JG, Thrall BD. Waters KM, et al. Toxicol Sci. 2009 Feb;107(2):553-69. doi: 10.1093/toxsci/kfn250. Epub 2008 Dec 10. Toxicol Sci. 2009. PMID: 19073995 Free PMC article.

6

Combined statistical analyses of peptide intensities and peptide occurrences improves identification of significant peptides from MS-based proteomics data.

Webb-Robertson BJ, McCue LA, Waters KM, Matzke MM, Jacobs JM, Metz TO, Varnum SM, Pounds JG. Webb-Robertson BJ, et al. Among authors: waters km. J Proteome Res. 2010 Nov 5;9(11):5748-56. doi: 10.1021/pr1005247. Epub 2010 Oct 8. J Proteome Res. 2010. PMID: 20831241 Free PMC article.

7

Comparative proteomics and pulmonary toxicity of instilled single-walled carbon nanotubes, crocidolite asbestos, and ultrafine carbon black in mice.

Teeguarden JG, Webb-Robertson BJ, Waters KM, Murray AR, Kisin ER, Varnum SM, Jacobs JM, Pounds JG, Zanger RC, Shvedova AA. Teeguarden JG, et al. Among authors: waters km. Toxicol Sci. 2011 Mar;120(1):123-35. doi: 10.1093/toxsci/kfq363. Epub 2010 Dec 6. Toxicol Sci. 2011. PMID: 21135415 Free PMC article.

8

Controlling the response: predictive modeling of a highly central, pathogen-targeted core response module in macrophage activation.

McDermott JE, Archuleta M, Thrall BD, Adkins JN, Waters KM. McDermott JE, et al. Among authors: waters km. PLoS One. 2011 Feb 14;6(2):e14673. doi: 10.1371/journal.pone.0014673. PLoS One. 2011. PMID: 21339814 Free PMC article.

9

Improved quality control processing of peptide-centric LC-MS proteomics data.

Matzke MM, Waters KM, Metz TO, Jacobs JM, Sims AC, Baric RS, Pounds JG, Webb-Robertson BJ. Matzke MM, et al. Among authors: waters km. Bioinformatics. 2011 Oct 15;27(20):2866-72. doi: 10.1093/bioinformatics/btr479. Epub 2011 Aug 18. Bioinformatics. 2011. PMID: 21852304 Free PMC article.

10

A statistical selection strategy for normalization procedures in LC-MS proteomics experiments through dataset-dependent ranking of normalization scaling factors.

Webb-Robertson BJ, Matzke MM, Jacobs JM, Pounds JG, Waters KM. Webb-Robertson BJ, et al. Among authors: waters km. Proteomics. 2011 Dec;11(24):4736-41. doi: 10.1002/pmic.201100078. Epub 2011 Nov 17. Proteomics. 2011. PMID: 22038874 Free PMC article.

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