Dekker J - Search Results

1

The active FMR1 promoter is associated with a large domain of altered chromatin conformation with embedded local histone modifications.

Gheldof N, Tabuchi TM, Dekker J. Gheldof N, et al. Among authors: dekker j. Proc Natl Acad Sci U S A. 2006 Aug 15;103(33):12463-8. doi: 10.1073/pnas.0605343103. Epub 2006 Aug 4. Proc Natl Acad Sci U S A. 2006. PMID: 16891414 Free PMC article.

2

A mechanical basis for chromosome function.

Kleckner N, Zickler D, Jones GH, Dekker J, Padmore R, Henle J, Hutchinson J. Kleckner N, et al. Among authors: dekker j. Proc Natl Acad Sci U S A. 2004 Aug 24;101(34):12592-7. doi: 10.1073/pnas.0402724101. Epub 2004 Aug 6. Proc Natl Acad Sci U S A. 2004. PMID: 15299144 Free PMC article.

3

The three 'C' s of chromosome conformation capture: controls, controls, controls.

Dekker J. Dekker J. Nat Methods. 2006 Jan;3(1):17-21. doi: 10.1038/nmeth823. Nat Methods. 2006. PMID: 16369547

4

Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements.

Dostie J, Richmond TA, Arnaout RA, Selzer RR, Lee WL, Honan TA, Rubio ED, Krumm A, Lamb J, Nusbaum C, Green RD, Dekker J. Dostie J, et al. Among authors: dekker j. Genome Res. 2006 Oct;16(10):1299-309. doi: 10.1101/gr.5571506. Epub 2006 Sep 5. Genome Res. 2006. PMID: 16954542 Free PMC article.

5

Mapping networks of physical interactions between genomic elements using 5C technology.

Dostie J, Dekker J. Dostie J, et al. Among authors: dekker j. Nat Protoc. 2007;2(4):988-1002. doi: 10.1038/nprot.2007.116. Nat Protoc. 2007. PMID: 17446898

6

GC- and AT-rich chromatin domains differ in conformation and histone modification status and are differentially modulated by Rpd3p.

Dekker J. Dekker J. Genome Biol. 2007;8(6):R116. doi: 10.1186/gb-2007-8-6-r116. Genome Biol. 2007. PMID: 17577398 Free PMC article.

7

Mapping chromatin interactions by chromosome conformation capture.

Miele A, Gheldof N, Tabuchi TM, Dostie J, Dekker J. Miele A, et al. Among authors: dekker j. Curr Protoc Mol Biol. 2006 May;Chapter 21:Unit 21.11. doi: 10.1002/0471142727.mb2111s74. Curr Protoc Mol Biol. 2006. PMID: 18265379

8

Gene regulation in the third dimension.

Dekker J. Dekker J. Science. 2008 Mar 28;319(5871):1793-4. doi: 10.1126/science.1152850. Science. 2008. PMID: 18369139 Free PMC article.

9

Mapping in vivo chromatin interactions in yeast suggests an extended chromatin fiber with regional variation in compaction.

Dekker J. Dekker J. J Biol Chem. 2008 Dec 12;283(50):34532-40. doi: 10.1074/jbc.M806479200. Epub 2008 Oct 16. J Biol Chem. 2008. PMID: 18930918 Free PMC article.

10

Long-range chromosomal interactions and gene regulation.

Miele A, Dekker J. Miele A, et al. Among authors: dekker j. Mol Biosyst. 2008 Nov;4(11):1046-57. doi: 10.1039/b803580f. Epub 2008 Aug 13. Mol Biosyst. 2008. PMID: 18931780 Free PMC article. Review.

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